Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021B14.5 |
| Conread position: | 525-700 |
| Cow position: | chr20:21941717-21941545 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 528-708 |
| Cow position: | chr20:14755558-14755737 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 532-708 |
| Cow position: | chr20:3141860-3141677 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 134, 17 |
| Conread position: | 545-669 |
| Cow position: | chr20:23384574-23384445 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 547-708 |
| Cow position: | chr20:14490516-14490349 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 548-669 |
| Cow position: | chr20:25021701-25021581 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 549-708 |
| Cow position: | chr20:13023231-13023399 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 553-668 |
| Cow position: | chr20:36366086-36365970 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 553-669 |
| Cow position: | chr20:29990181-29990295 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 553-700 |
| Cow position: | chr20:27315241-27315089 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 107, 28 |
| Conread position: | 554-669 |
| Cow position: | chr20:18500797-18500680 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 555-669 |
| Cow position: | chr20:6054246-6054356 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 555-669 |
| Cow position: | chr20:10200611-10200499 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 555-684 |
| Cow position: | chr20:32237430-32237557 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 555-708 |
| Cow position: | chr20:4755570-4755729 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 106, 155 |
| Conread position: | 555-708 |
| Cow position: | chr20:17733291-17733456 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 555-708 |
| Cow position: | chr20:21018686-21018528 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 154 |
| Conread position: | 555-708 |
| Cow position: | chr20:32636067-32636227 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 555-708 |
| Cow position: | chr20:37273259-37273101 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 558-699 |
| Cow position: | chr20:19622981-19623132 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 558-700 |
| Cow position: | chr20:21169507-21169651 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 96 |
| Conread position: | 559-658 |
| Cow position: | chr20:28935381-28935481 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 559-669 |
| Cow position: | chr20:14433159-14433270 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 559-670 |
| Cow position: | chr20:10486096-10486207 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 559-700 |
| Cow position: | chr20:35605461-35605318 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 561-660 |
| Cow position: | chr20:24883101-24883201 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 561-700 |
| Cow position: | chr20:37919118-37919259 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 48 |
| Conread position: | 561-707 |
| Cow position: | chr20:37609881-37609724 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 561-708 |
| Cow position: | chr20:7934538-7934385 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 561-708 |
| Cow position: | chr20:34097688-34097850 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 563-699 |
| Cow position: | chr20:13034076-13034218 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 563-700 |
| Cow position: | chr20:11499256-11499119 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 564-708 |
| Cow position: | chr20:26424664-26424509 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 566-669 |
| Cow position: | chr20:20892421-20892525 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 567-708 |
| Cow position: | chr20:4944995-4945151 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 567-708 |
| Cow position: | chr20:19201786-19201634 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 568-699 |
| Cow position: | chr20:14759423-14759553 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 569-708 |
| Cow position: | chr20:31845035-31845182 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 571-667 |
| Cow position: | chr20:36097773-36097675 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 571-701 |
| Cow position: | chr20:19919570-19919705 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 572-667 |
| Cow position: | chr20:21210275-21210181 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 572-708 |
| Cow position: | chr20:1824383-1824525 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 572-708 |
| Cow position: | chr20:29755027-29754879 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 576-701 |
| Cow position: | chr20:31148394-31148268 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 578-669 |
| Cow position: | chr20:9730245-9730154 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 79 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 578-708 |
| Cow position: | chr20:35442041-35442179 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 5 |
| Conread position: | 583-667 |
| Cow position: | chr20:26054988-26055072 (view UCSC Genome Browser custom track) |
| Alignm length: | 85 |
| Alignm identity: | 75 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 587-700 |
| Cow position: | chr20:16566521-16566408 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 89 |
| Conread position: | 588-708 |
| Cow position: | chr20:4334307-4334427 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 65 |
Show alignments to all cow chromosomes.