Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021B14.5 |
| Conread position: | 514-700 |
| Cow position: | chr27:20561287-20561470 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 542-659 |
| Cow position: | chr27:14269605-14269490 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 70, 36 |
| Conread position: | 543-669 |
| Cow position: | chr27:1353301-1353429 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 548-708 |
| Cow position: | chr27:6162672-6162514 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 11 |
| Conread position: | 549-671 |
| Cow position: | chr27:26481468-26481345 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 551-708 |
| Cow position: | chr27:15315254-15315415 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 552-660 |
| Cow position: | chr27:9338256-9338145 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 552-669 |
| Cow position: | chr27:29429008-29428890 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 552-669 |
| Cow position: | chr27:30374849-30374733 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 552-670 |
| Cow position: | chr27:26236062-26236179 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 114, 45 |
| Conread position: | 554-657 |
| Cow position: | chr27:27405336-27405232 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 554-701 |
| Cow position: | chr27:21101554-21101401 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 107, 27 |
| Conread position: | 554-701 |
| Cow position: | chr27:26437388-26437232 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 555-659 |
| Cow position: | chr27:18688678-18688573 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 555-659 |
| Cow position: | chr27:19823046-19823149 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 555-659 |
| Cow position: | chr27:22708729-22708836 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 555-669 |
| Cow position: | chr27:9504285-9504402 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 555-685 |
| Cow position: | chr27:26613598-26613730 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 555-700 |
| Cow position: | chr27:4944771-4944626 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-667 |
| Cow position: | chr27:31479010-31479121 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-700 |
| Cow position: | chr27:18791779-18791623 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 557-699 |
| Cow position: | chr27:67973-68113 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 558-670 |
| Cow position: | chr27:28922159-28922045 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 558-708 |
| Cow position: | chr27:15867128-15867286 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 104 |
| Conread position: | 559-666 |
| Cow position: | chr27:16088530-16088637 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 559-669 |
| Cow position: | chr27:13181644-13181752 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 559-701 |
| Cow position: | chr27:4411951-4411818 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 560-700 |
| Cow position: | chr27:20749262-20749122 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 104, 116 |
| Conread position: | 561-648 |
| Cow position: | chr27:27270828-27270740 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 561-669 |
| Cow position: | chr27:27438769-27438659 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 562-652 |
| Cow position: | chr27:1789438-1789347 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 562-669 |
| Cow position: | chr27:23232652-23232761 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 563-701 |
| Cow position: | chr27:11982907-11982756 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 564-708 |
| Cow position: | chr27:15332541-15332401 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 565-669 |
| Cow position: | chr27:27740549-27740444 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 566-660 |
| Cow position: | chr27:16186074-16186168 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 566-700 |
| Cow position: | chr27:28190442-28190312 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 567-658 |
| Cow position: | chr27:18543733-18543826 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 570-708 |
| Cow position: | chr27:4414065-4413923 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 570-708 |
| Cow position: | chr27:18558107-18558257 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 573-708 |
| Cow position: | chr27:9977439-9977579 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 573-708 |
| Cow position: | chr27:11145635-11145775 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 574-663 |
| Cow position: | chr27:19717652-19717741 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 77 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 576-660 |
| Cow position: | chr27:21978387-21978303 (view UCSC Genome Browser custom track) |
| Alignm length: | 85 |
| Alignm identity: | 74 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 578-699 |
| Cow position: | chr27:1637168-1637048 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 578-708 |
| Cow position: | chr27:11208799-11208658 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 578-708 |
| Cow position: | chr27:28932044-28931905 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 579-669 |
| Cow position: | chr27:26467802-26467712 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 77 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 580-708 |
| Cow position: | chr27:20048397-20048530 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 580-708 |
| Cow position: | chr27:28002043-28001916 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 585-669 |
| Cow position: | chr27:23554564-23554480 (view UCSC Genome Browser custom track) |
| Alignm length: | 85 |
| Alignm identity: | 74 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 588-701 |
| Cow position: | chr27:22792607-22792721 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
Show alignments to all cow chromosomes.