Cow genome map

Conread name: Ss1.1-Pig3-SRG8021B14.5

Conread position: 542-670
Cow position: chr28:3484825-3484697 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 17

Conread position: 542-670
Cow position: chr28:16159634-16159759 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 544-701
Cow position: chr28:4937003-4937170 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 11

Conread position: 545-652
Cow position: chr28:21744946-21744841 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 545-669
Cow position: chr28:3310982-3311109 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 545-708
Cow position: chr28:5674108-5673940 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 547-669
Cow position: chr28:11398560-11398682 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 547-685
Cow position: chr28:3449540-3449400 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 107, 31

Conread position: 548-675
Cow position: chr28:21118910-21118786 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 549-708
Cow position: chr28:11411306-11411469 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 552-669
Cow position: chr28:751458-751340 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 552-708
Cow position: chr28:10615721-10615881 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 108, 56

Conread position: 553-659
Cow position: chr28:29500635-29500529 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 553-664
Cow position: chr28:10528727-10528841 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 98
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 553-688
Cow position: chr28:21207146-21207282 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 5, 106

Conread position: 553-708
Cow position: chr28:3424003-3423842 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 24

Conread position: 554-671
Cow position: chr28:117531-117649 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 555-655
Cow position: chr28:3678585-3678485 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 555-660
Cow position: chr28:2892484-2892377 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 555-668
Cow position: chr28:19127944-19128059 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 555-669
Cow position: chr28:13356138-13356253 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 110

Conread position: 555-669
Cow position: chr28:17620133-17620247 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 555-670
Cow position: chr28:6301312-6301195 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 555-700
Cow position: chr28:22170057-22170207 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 111, 23

Conread position: 555-708
Cow position: chr28:6563665-6563832 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 555-708
Cow position: chr28:10959025-10958867 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 555-708
Cow position: chr28:11866440-11866600 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 555-708
Cow position: chr28:32015012-32014849 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 556-708
Cow position: chr28:11059717-11059565 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 124

Conread position: 558-700
Cow position: chr28:19564016-19564155 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 96, 27

Conread position: 559-658
Cow position: chr28:8347958-8347857 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 559-670
Cow position: chr28:4375404-4375516 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 559-671
Cow position: chr28:118835-118723 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 19

Conread position: 559-699
Cow position: chr28:16252182-16252332 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 559-701
Cow position: chr28:10606415-10606562 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 66

Conread position: 561-660
Cow position: chr28:1654869-1654969 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 561-677
Cow position: chr28:508187-508073 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 561-700
Cow position: chr28:17060281-17060139 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 561-701
Cow position: chr28:16200520-16200671 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 100, 0

Conread position: 562-700
Cow position: chr28:19217028-19216894 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 562-708
Cow position: chr28:27445354-27445508 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 563-669
Cow position: chr28:7644960-7644856 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 563-669
Cow position: chr28:19994728-19994834 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 564-668
Cow position: chr28:5630316-5630212 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 564-705
Cow position: chr28:18791253-18791106 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 564-708
Cow position: chr28:23531081-23530939 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 18, 45

Conread position: 565-660
Cow position: chr28:13370922-13371018 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 565-668
Cow position: chr28:6124042-6124146 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 19, 73

Conread position: 565-699
Cow position: chr28:21008454-21008592 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 47

Conread position: 565-700
Cow position: chr28:5428542-5428681 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 89, 41

Conread position: 565-708
Cow position: chr28:15362794-15362644 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 566-669
Cow position: chr28:22278412-22278512 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 567-659
Cow position: chr28:32203340-32203248 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 82
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 15, 41

Conread position: 567-669
Cow position: chr28:5436872-5436974 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 567-700
Cow position: chr28:3143672-3143805 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 87, 14

Conread position: 567-708
Cow position: chr28:12448434-12448294 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 15, 42

Conread position: 567-708
Cow position: chr28:26960699-26960844 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 91, 0

Conread position: 568-698
Cow position: chr28:19395079-19394943 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 14, 48

Conread position: 569-701
Cow position: chr28:3725996-3726137 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 572-669
Cow position: chr28:11562032-11562131 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 573-708
Cow position: chr28:12951624-12951482 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 575-670
Cow position: chr28:5138793-5138889 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 576-669
Cow position: chr28:8716175-8716268 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 576-708
Cow position: chr28:4186108-4185971 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 576-708
Cow position: chr28:16856901-16857042 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 577-708
Cow position: chr28:21263358-21263222 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 578-700
Cow position: chr28:5236077-5235954 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 578-708
Cow position: chr28:11346286-11346422 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 578-708
Cow position: chr28:22085343-22085477 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 5

Conread position: 587-700
Cow position: chr28:17727918-17728031 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 77, 85

Conread position: 590-708
Cow position: chr28:11814888-11815011 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 61, 0

Show alignments to all cow chromosomes.