Cow genome map

Conread name: Ss1.1-Pig3-SRG8021B14.5

Conread position: 1-563
Cow position: chr3:50326019-50326580 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 334

Conread position: 534-658
Cow position: chr3:33285-33412 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 534-668
Cow position: chr3:22165194-22165331 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 12

Conread position: 536-671
Cow position: chr3:79398361-79398226 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 24

Conread position: 544-701
Cow position: chr3:53836499-53836664 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 547-669
Cow position: chr3:79893289-79893413 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 548-701
Cow position: chr3:5823353-5823500 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 124, 30

Conread position: 549-697
Cow position: chr3:65237226-65237071 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 549-700
Cow position: chr3:55271793-55271948 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 105, 27

Conread position: 550-660
Cow position: chr3:32689991-32690103 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 551-652
Cow position: chr3:43727473-43727369 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 551-669
Cow position: chr3:5703378-5703259 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 551-669
Cow position: chr3:76300975-76300857 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 552-668
Cow position: chr3:55318698-55318814 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 552-685
Cow position: chr3:41746301-41746430 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 552-699
Cow position: chr3:83491281-83491130 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 553-669
Cow position: chr3:42933686-42933566 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 553-700
Cow position: chr3:59605042-59604887 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 553-708
Cow position: chr3:9662968-9663136 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 555-659
Cow position: chr3:75151188-75151293 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 555-669
Cow position: chr3:635373-635262 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 555-669
Cow position: chr3:33460400-33460516 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 555-669
Cow position: chr3:47735416-47735304 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 555-669
Cow position: chr3:72910878-72910992 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 23, 5

Conread position: 555-699
Cow position: chr3:11608013-11607866 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 28

Conread position: 555-700
Cow position: chr3:10591317-10591460 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 90, 28

Conread position: 555-700
Cow position: chr3:18831612-18831469 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 99, 23

Conread position: 555-700
Cow position: chr3:65058896-65058742 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 555-700
Cow position: chr3:70402836-70402687 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 555-708
Cow position: chr3:69849100-69849257 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 105

Conread position: 555-708
Cow position: chr3:71238346-71238189 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 33

Conread position: 555-708
Cow position: chr3:76168430-76168596 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 556-669
Cow position: chr3:51150327-51150215 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 97
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 43

Conread position: 556-700
Cow position: chr3:70333032-70333178 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 559-695
Cow position: chr3:24584957-24585092 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 109, 23

Conread position: 559-701
Cow position: chr3:76056094-76056242 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 559-703
Cow position: chr3:40794527-40794669 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 559-708
Cow position: chr3:31489898-31489756 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 561-657
Cow position: chr3:1452824-1452921 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 561-660
Cow position: chr3:1011683-1011584 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 561-669
Cow position: chr3:48468369-48468259 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 561-696
Cow position: chr3:58562888-58562746 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 101, 23

Conread position: 561-699
Cow position: chr3:78071601-78071746 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 82, 0

Conread position: 561-700
Cow position: chr3:51608992-51609142 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 561-708
Cow position: chr3:2016624-2016471 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 562-657
Cow position: chr3:15973760-15973665 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 83
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 562-669
Cow position: chr3:77188630-77188523 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 562-697
Cow position: chr3:76270078-76269938 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 562-701
Cow position: chr3:30180275-30180129 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 99

Conread position: 562-708
Cow position: chr3:67519986-67520130 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 120
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 91, 0

Conread position: 562-708
Cow position: chr3:83934916-83934761 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 563-669
Cow position: chr3:43388934-43389043 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 563-708
Cow position: chr3:40212844-40212998 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 564-659
Cow position: chr3:78201837-78201740 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 18, 40

Conread position: 564-700
Cow position: chr3:3889389-3889524 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 564-700
Cow position: chr3:53249669-53249532 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 20

Conread position: 564-700
Cow position: chr3:72027829-72027680 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 564-708
Cow position: chr3:53604554-53604710 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 566-669
Cow position: chr3:80958322-80958426 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 566-708
Cow position: chr3:20802454-20802595 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 95, 0

Conread position: 567-660
Cow position: chr3:11281956-11281861 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 567-708
Cow position: chr3:15859194-15859343 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 15, 122

Conread position: 568-669
Cow position: chr3:29386055-29385951 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 89
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 568-675
Cow position: chr3:19044583-19044691 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 568-700
Cow position: chr3:58527563-58527426 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 14, 91

Conread position: 568-708
Cow position: chr3:28902578-28902723 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 569-660
Cow position: chr3:55730281-55730374 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 569-708
Cow position: chr3:3985500-3985358 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 569-708
Cow position: chr3:18687080-18686942 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 75, 16

Conread position: 570-657
Cow position: chr3:70333787-70333874 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 570-669
Cow position: chr3:10454028-10453927 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 570-700
Cow position: chr3:27246785-27246915 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 94, 102

Conread position: 570-708
Cow position: chr3:23804684-23804541 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 38

Conread position: 576-700
Cow position: chr3:15160693-15160564 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 578-660
Cow position: chr3:68303492-68303410 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 75
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 578-669
Cow position: chr3:22078252-22078161 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 578-699
Cow position: chr3:37641500-37641371 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 578-700
Cow position: chr3:59681733-59681860 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 578-701
Cow position: chr3:49787730-49787601 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 578-705
Cow position: chr3:2648334-2648471 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 578-708
Cow position: chr3:20996828-20996961 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 81

Conread position: 586-708
Cow position: chr3:23753650-23753526 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 587-700
Cow position: chr3:51233939-51234052 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 587-700
Cow position: chr3:62312963-62312839 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 587-700
Cow position: chr3:62370222-62370098 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 75, 0

Conread position: 587-708
Cow position: chr3:13329628-13329750 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 69, 90

Show alignments to all cow chromosomes.