Cow genome map

Conread name: Ss1.1-Pig3-SRG8021B14.5

Conread position: 536-669
Cow position: chr9:26477000-26477134 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 547-670
Cow position: chr9:44526906-44527033 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 547-708
Cow position: chr9:34410595-34410427 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 68

Conread position: 547-708
Cow position: chr9:35028372-35028196 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 549-664
Cow position: chr9:37016492-37016376 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 11

Conread position: 549-669
Cow position: chr9:8613411-8613292 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 549-700
Cow position: chr9:48016791-48016941 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 111, 0

Conread position: 550-669
Cow position: chr9:31625933-31626053 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 552-660
Cow position: chr9:27279110-27279219 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 552-669
Cow position: chr9:28315227-28315347 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 552-669
Cow position: chr9:50977450-50977334 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 552-708
Cow position: chr9:35295501-35295659 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 102, 26

Conread position: 552-708
Cow position: chr9:54681329-54681478 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 553-659
Cow position: chr9:53413471-53413367 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 553-697
Cow position: chr9:39148888-39149037 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 101, 0

Conread position: 553-701
Cow position: chr9:45170582-45170419 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 554-650
Cow position: chr9:19743784-19743878 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 555-657
Cow position: chr9:36849435-36849539 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 555-660
Cow position: chr9:6954446-6954340 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 555-668
Cow position: chr9:34286606-34286719 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 555-668
Cow position: chr9:48046340-48046456 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 555-669
Cow position: chr9:41644944-41644831 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 555-701
Cow position: chr9:7805592-7805743 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 555-708
Cow position: chr9:4629917-4630073 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 99, 0

Conread position: 555-708
Cow position: chr9:9091306-9091136 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 556-659
Cow position: chr9:32662229-32662124 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 556-708
Cow position: chr9:19657167-19657007 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 54

Conread position: 556-708
Cow position: chr9:48808951-48809107 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 18, 82

Conread position: 558-659
Cow position: chr9:34390225-34390327 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 559-659
Cow position: chr9:28747707-28747606 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 559-669
Cow position: chr9:34423429-34423540 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 559-669
Cow position: chr9:36457809-36457918 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 104, 19

Conread position: 560-670
Cow position: chr9:8066226-8066116 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 98

Conread position: 561-708
Cow position: chr9:7543444-7543294 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 21, 48

Conread position: 561-708
Cow position: chr9:8645078-8645235 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 100, 34

Conread position: 561-708
Cow position: chr9:51891065-51891215 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 561-708
Cow position: chr9:61019553-61019393 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 562-648
Cow position: chr9:11886332-11886419 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 562-660
Cow position: chr9:28866280-28866180 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 562-668
Cow position: chr9:5399276-5399383 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 562-708
Cow position: chr9:59586130-59586280 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 92, 0

Conread position: 563-660
Cow position: chr9:26578394-26578295 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 563-669
Cow position: chr9:9724061-9723957 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 563-669
Cow position: chr9:52510929-52511037 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 563-708
Cow position: chr9:3946328-3946179 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 103, 19

Conread position: 563-708
Cow position: chr9:34917361-34917216 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 563-708
Cow position: chr9:51566683-51566526 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 564-669
Cow position: chr9:8537122-8537228 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 565-657
Cow position: chr9:30653240-30653147 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 565-669
Cow position: chr9:5068655-5068759 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 567-699
Cow position: chr9:11123661-11123523 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 567-708
Cow position: chr9:14738070-14738218 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 569-708
Cow position: chr9:2397632-2397776 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 99, 89

Conread position: 569-708
Cow position: chr9:63785085-63784945 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 85, 13

Conread position: 570-701
Cow position: chr9:8767592-8767455 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 572-706
Cow position: chr9:17769145-17769285 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 573-669
Cow position: chr9:31514107-31514013 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 578-659
Cow position: chr9:39681132-39681213 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 73
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 580-708
Cow position: chr9:16216811-16216948 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 580-708
Cow position: chr9:44822489-44822355 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 71, 0

Show alignments to all cow chromosomes.