Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8009L03.5 |
| Conread position: | 3-452 |
| Cow position: | chr25:33506719-33507166 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 4-399 |
| Cow position: | chr25:25652913-25653308 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 243, 253 |
| Conread position: | 4-696 |
| Cow position: | chr25:25652241-25652936 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 233 |
| Conread position: | 6-323 |
| Cow position: | chr25:22941325-22941005 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 7-414 |
| Cow position: | chr25:24385192-24384785 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 92, 82 |
| Conread position: | 7-484 |
| Cow position: | chr25:33530286-33530762 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 9-240 |
| Cow position: | chr25:3676134-3676365 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-696 |
| Cow position: | chr25:25652414-25653104 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 411 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 416, 406 |
| Conread position: | 10-329 |
| Cow position: | chr25:3676051-3676370 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 95 |
| Conread position: | 10-620 |
| Cow position: | chr25:33530204-33530817 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 374 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 149, 164 |
| Conread position: | 13-514 |
| Cow position: | chr25:3636500-3635999 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 171, 155 |
| Conread position: | 16-437 |
| Cow position: | chr25:3636413-3635992 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 82, 76 |
| Conread position: | 16-487 |
| Cow position: | chr25:25652841-25653312 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-591 |
| Cow position: | chr25:3663996-3664574 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 331 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 243, 226 |
| Conread position: | 16-696 |
| Cow position: | chr25:25652505-25653188 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 88 |
| Conread position: | 21-413 |
| Cow position: | chr25:4657479-4657087 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 120, 107 |
| Conread position: | 26-414 |
| Cow position: | chr25:33529089-33529477 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-658 |
| Cow position: | chr25:25652683-25653318 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 302 |
| Conread position: | 26-661 |
| Cow position: | chr25:25652599-25653237 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 84 |
| Conread position: | 34-658 |
| Cow position: | chr25:33530059-33530687 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 46 |
| Conread position: | 36-496 |
| Cow position: | chr25:34473508-34473965 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 125, 135 |
| Conread position: | 39-688 |
| Cow position: | chr25:25652192-25652844 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 518, 0 |
| Conread position: | 40-463 |
| Cow position: | chr25:3636557-3636134 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 202, 218 |
| Conread position: | 46-686 |
| Cow position: | chr25:24385405-24384762 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 59-508 |
| Cow position: | chr25:33529038-33529487 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 91-541 |
| Cow position: | chr25:33506720-33507172 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 68, 91 |
| Conread position: | 109-398 |
| Cow position: | chr25:3676066-3676355 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 74 |
| Conread position: | 110-488 |
| Cow position: | chr25:22940525-22940147 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 95, 88 |
| Conread position: | 112-427 |
| Cow position: | chr25:34734016-34733701 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 138, 146 |
| Conread position: | 118-533 |
| Cow position: | chr25:3675991-3676406 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 59, 65 |
| Conread position: | 121-496 |
| Cow position: | chr25:4657463-4657088 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 144, 121 |
| Conread position: | 125-627 |
| Cow position: | chr25:24385410-24384905 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 117, 133 |
| Conread position: | 134-677 |
| Cow position: | chr25:3636547-3636001 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 141-691 |
| Cow position: | chr25:3663953-3664506 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 331 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 142-601 |
| Cow position: | chr25:3675932-3676393 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 283 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 198-688 |
| Cow position: | chr25:25652183-25652676 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 226, 215 |
| Conread position: | 203-558 |
| Cow position: | chr25:33506748-33507103 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 215, 232 |
| Conread position: | 206-628 |
| Cow position: | chr25:3636559-3636134 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 208-688 |
| Cow position: | chr25:34473512-34473992 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 217-661 |
| Cow position: | chr25:33530075-33530522 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 218-555 |
| Cow position: | chr25:4657450-4657113 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 291-696 |
| Cow position: | chr25:3636558-3636150 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 294-691 |
| Cow position: | chr25:3663938-3664338 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 216, 209 |
| Conread position: | 301-696 |
| Cow position: | chr25:33529028-33529426 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 349-696 |
| Cow position: | chr25:3675970-3676320 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 406-658 |
| Cow position: | chr25:4657430-4657175 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 111, 104 |
Show alignments to all cow chromosomes.