Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8009L03.5 |
| Conread position: | 1-696 |
| Cow position: | chr4:65350011-65350706 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 326 |
| Conread position: | 2-451 |
| Cow position: | chr4:65350345-65350794 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 140 |
| Conread position: | 2-696 |
| Cow position: | chr4:65261913-65261224 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 428 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 117, 11 |
| Conread position: | 3-696 |
| Cow position: | chr4:65349929-65350622 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-549 |
| Cow position: | chr4:65703527-65702986 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 334 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 249, 16 |
| Conread position: | 7-325 |
| Cow position: | chr4:65494795-65494477 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-452 |
| Cow position: | chr4:65703611-65703166 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 10-326 |
| Cow position: | chr4:65702819-65702503 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 10-418 |
| Cow position: | chr4:65121591-65122000 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 268 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 5, 60 |
| Conread position: | 12-453 |
| Cow position: | chr4:65261575-65261133 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 241, 246 |
| Conread position: | 13-281 |
| Cow position: | chr4:65494705-65494437 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-324 |
| Cow position: | chr4:65121763-65122074 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-439 |
| Cow position: | chr4:65121686-65122105 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 98, 86 |
| Conread position: | 24-532 |
| Cow position: | chr4:65350286-65350791 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 225, 198 |
| Conread position: | 25-502 |
| Cow position: | chr4:65494951-65494468 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 98, 164 |
| Conread position: | 41-545 |
| Cow position: | chr4:65261630-65261124 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 50-601 |
| Cow position: | chr4:65121548-65122102 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 341 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 203, 190 |
| Conread position: | 82-696 |
| Cow position: | chr4:65703617-65703006 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 85-456 |
| Cow position: | chr4:65494798-65494430 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 94-696 |
| Cow position: | chr4:65349768-65350373 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 168 |
| Conread position: | 109-622 |
| Cow position: | chr4:65494951-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 337 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 109-696 |
| Cow position: | chr4:65349867-65350457 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 111-606 |
| Cow position: | chr4:65261644-65261146 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 308 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 116-537 |
| Cow position: | chr4:65702881-65702460 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 117-687 |
| Cow position: | chr4:65261725-65261152 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 351 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 82, 128 |
| Conread position: | 119-548 |
| Cow position: | chr4:65703667-65703238 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 124, 139 |
| Conread position: | 132-592 |
| Cow position: | chr4:65121546-65122009 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 139-662 |
| Cow position: | chr4:65495005-65494473 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 340 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 198-595 |
| Cow position: | chr4:65702883-65702483 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 200-439 |
| Cow position: | chr4:65146417-65146656 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 203-696 |
| Cow position: | chr4:65703667-65703171 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 302 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 218-696 |
| Cow position: | chr4:65495010-65494523 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 125, 109 |
| Conread position: | 291-696 |
| Cow position: | chr4:65702874-65702466 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 136, 123 |
Show alignments to all cow chromosomes.