Cow genome map

Conread name: Ss1.1-Pig4-TMW8016A06.3

Conread position: 384-505
Cow position: chr23:30244314-30244435 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 540-672
Cow position: chr23:3918385-3918253 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 550-660
Cow position: chr23:36309150-36309258 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 550-671
Cow position: chr23:2179924-2179804 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 550-672
Cow position: chr23:28206334-28206456 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 552-667
Cow position: chr23:7845011-7845129 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 554-655
Cow position: chr23:39762095-39762194 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 554-656
Cow position: chr23:18367423-18367524 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 554-658
Cow position: chr23:36129175-36129070 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 57, 45

Conread position: 554-659
Cow position: chr23:1640538-1640643 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 554-659
Cow position: chr23:8911205-8911310 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 554-659
Cow position: chr23:11845014-11845120 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 79

Conread position: 554-660
Cow position: chr23:406431-406328 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 554-660
Cow position: chr23:1664415-1664521 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-660
Cow position: chr23:7402433-7402539 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 554-660
Cow position: chr23:29626141-29626247 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 554-662
Cow position: chr23:16563569-16563677 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 554-663
Cow position: chr23:1605406-1605515 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-663
Cow position: chr23:1905755-1905864 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 554-663
Cow position: chr23:8918126-8918017 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 554-663
Cow position: chr23:18698299-18698189 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 554-666
Cow position: chr23:1883120-1883232 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 554-666
Cow position: chr23:29441273-29441161 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr23:4579310-4579194 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 554-667
Cow position: chr23:9132939-9132826 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr23:9268317-9268429 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 554-667
Cow position: chr23:9712840-9712953 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr23:9734146-9734254 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 554-667
Cow position: chr23:13511460-13511572 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 554-669
Cow position: chr23:1670644-1670757 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 554-669
Cow position: chr23:14839008-14838894 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 85, 46

Conread position: 554-669
Cow position: chr23:21336762-21336647 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 554-669
Cow position: chr23:25363070-25363186 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 99
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 554-669
Cow position: chr23:33601793-33601682 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 554-669
Cow position: chr23:36172273-36172389 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 106

Conread position: 554-670
Cow position: chr23:8959326-8959439 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 554-670
Cow position: chr23:30662897-30662785 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 554-671
Cow position: chr23:5162153-5162276 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 554-671
Cow position: chr23:10554284-10554168 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 554-671
Cow position: chr23:20605554-20605434 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 554-671
Cow position: chr23:26741723-26741605 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 85, 80

Conread position: 554-671
Cow position: chr23:27529564-27529448 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 554-671
Cow position: chr23:28118374-28118259 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 554-671
Cow position: chr23:31601731-31601614 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 554-671
Cow position: chr23:40777990-40778106 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 554-672
Cow position: chr23:344451-344333 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 84, 80

Conread position: 554-672
Cow position: chr23:7175347-7175465 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr23:7392556-7392440 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 91

Conread position: 554-672
Cow position: chr23:7937812-7937695 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 554-672
Cow position: chr23:11128959-11129079 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 554-672
Cow position: chr23:14164677-14164556 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 112

Conread position: 554-672
Cow position: chr23:16072957-16073075 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr23:18802546-18802428 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr23:24867029-24867147 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 91
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr23:25669343-25669225 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr23:26841176-26841295 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 45

Conread position: 554-672
Cow position: chr23:39793180-39793299 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 79

Conread position: 554-672
Cow position: chr23:40781055-40781171 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 555-651
Cow position: chr23:1922341-1922244 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 555-655
Cow position: chr23:20744861-20744761 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 555-656
Cow position: chr23:26231050-26231151 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 555-658
Cow position: chr23:6995241-6995143 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 555-667
Cow position: chr23:2799296-2799406 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 53, 28

Conread position: 555-667
Cow position: chr23:26319147-26319257 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 83, 18

Conread position: 555-671
Cow position: chr23:14739178-14739292 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 556-656
Cow position: chr23:3247317-3247417 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 556-659
Cow position: chr23:14896076-14895972 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 19, 45

Conread position: 556-660
Cow position: chr23:17796588-17796486 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 556-663
Cow position: chr23:13945486-13945593 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 556-667
Cow position: chr23:18322690-18322580 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 557-659
Cow position: chr23:1321464-1321362 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 89
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 557-663
Cow position: chr23:186901-187010 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 80, 76

Conread position: 557-667
Cow position: chr23:21789041-21788931 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 558-669
Cow position: chr23:22804453-22804565 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 558-672
Cow position: chr23:39309384-39309270 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 560-667
Cow position: chr23:9235330-9235224 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 78, 39

Conread position: 560-671
Cow position: chr23:37065570-37065681 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 560-672
Cow position: chr23:533963-534074 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 560-672
Cow position: chr23:14580760-14580649 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 560-672
Cow position: chr23:26003797-26003909 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 561-667
Cow position: chr23:5870449-5870343 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 561-667
Cow position: chr23:36199027-36199133 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 561-672
Cow position: chr23:12896868-12896756 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 561-672
Cow position: chr23:27563975-27563864 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 562-664
Cow position: chr23:6592958-6592857 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 37

Conread position: 562-669
Cow position: chr23:35366363-35366257 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 562-669
Cow position: chr23:35369275-35369169 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 562-671
Cow position: chr23:26795169-26795060 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 563-660
Cow position: chr23:31493613-31493711 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 85
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 563-672
Cow position: chr23:16583173-16583064 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 564-667
Cow position: chr23:11209746-11209849 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 565-663
Cow position: chr23:3434210-3434114 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 565-667
Cow position: chr23:21452995-21452893 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 567-671
Cow position: chr23:4608642-4608538 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 567-672
Cow position: chr23:13674177-13674073 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 93
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 568-671
Cow position: chr23:1254418-1254520 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 569-672
Cow position: chr23:5744839-5744942 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 570-667
Cow position: chr23:20057124-20057027 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 570-672
Cow position: chr23:15056898-15056797 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 576-663
Cow position: chr23:33696026-33695939 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 577-671
Cow position: chr23:39302465-39302559 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.