Cow genome map

Conread name: Ss1.1-Pig4-TMW8016A06.3

Conread position: 403-497
Cow position: chr25:13325239-13325333 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 547-671
Cow position: chr25:23920137-23920012 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 548-667
Cow position: chr25:8482596-8482477 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 548-671
Cow position: chr25:18490789-18490912 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 84

Conread position: 550-663
Cow position: chr25:4488451-4488563 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 54, 83

Conread position: 550-667
Cow position: chr25:3992509-3992626 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 550-667
Cow position: chr25:33687179-33687060 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 552-671
Cow position: chr25:10643588-10643470 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 552-672
Cow position: chr25:21245885-21245766 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 554-648
Cow position: chr25:32278306-32278212 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 554-649
Cow position: chr25:17992418-17992323 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-655
Cow position: chr25:14791476-14791576 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 89
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 554-655
Cow position: chr25:26654630-26654730 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 554-658
Cow position: chr25:25948672-25948567 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 554-659
Cow position: chr25:21191210-21191315 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 554-659
Cow position: chr25:25051661-25051556 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 93
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 554-660
Cow position: chr25:1096300-1096406 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 554-660
Cow position: chr25:5341374-5341480 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 96, 40

Conread position: 554-660
Cow position: chr25:6464306-6464200 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 554-660
Cow position: chr25:7216551-7216657 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 554-660
Cow position: chr25:13840395-13840290 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 554-660
Cow position: chr25:14104017-14104121 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 554-660
Cow position: chr25:15273413-15273518 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 554-660
Cow position: chr25:18294591-18294484 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 93
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 554-660
Cow position: chr25:20348581-20348687 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 94
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 554-660
Cow position: chr25:24572795-24572903 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 554-662
Cow position: chr25:6421328-6421220 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 81

Conread position: 554-666
Cow position: chr25:31733013-31732901 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 79

Conread position: 554-666
Cow position: chr25:36871582-36871694 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr25:4860722-4860609 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr25:7800859-7800972 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr25:8347232-8347345 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 101
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr25:8485812-8485699 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr25:15714604-15714717 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr25:17975644-17975531 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr25:22346366-22346479 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr25:22531010-22531122 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 100, 0

Conread position: 554-667
Cow position: chr25:33959537-33959428 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 554-669
Cow position: chr25:14225072-14224958 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 554-669
Cow position: chr25:36119924-36120038 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 108, 0

Conread position: 554-671
Cow position: chr25:1735587-1735476 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 554-671
Cow position: chr25:5514730-5514846 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 0

Conread position: 554-671
Cow position: chr25:6226764-6226881 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 554-671
Cow position: chr25:12817096-12817212 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 554-671
Cow position: chr25:13720817-13720700 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 82

Conread position: 554-671
Cow position: chr25:16922069-16921954 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 554-671
Cow position: chr25:20060308-20060191 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 84, 59

Conread position: 554-671
Cow position: chr25:22549891-22549773 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 100
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 83, 0

Conread position: 554-671
Cow position: chr25:30816548-30816667 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 554-671
Cow position: chr25:33664173-33664056 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr25:3969119-3969237 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 95

Conread position: 554-672
Cow position: chr25:9023368-9023485 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 554-672
Cow position: chr25:10366029-10365910 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 17, 26

Conread position: 554-672
Cow position: chr25:11437079-11436961 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr25:13325325-13325440 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 50, 20

Conread position: 554-672
Cow position: chr25:17658338-17658454 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 554-672
Cow position: chr25:26238593-26238712 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 81

Conread position: 554-672
Cow position: chr25:27531545-27531426 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 554-672
Cow position: chr25:30319726-30319608 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 104
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 555-667
Cow position: chr25:12261170-12261061 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 555-667
Cow position: chr25:16064621-16064732 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 555-671
Cow position: chr25:33839112-33839227 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 83, 78

Conread position: 555-672
Cow position: chr25:12204194-12204311 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 555-672
Cow position: chr25:14117833-14117950 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 556-658
Cow position: chr25:36081600-36081700 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 556-667
Cow position: chr25:1837965-1838075 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 556-671
Cow position: chr25:26087240-26087355 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 557-667
Cow position: chr25:21193217-21193108 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 557-667
Cow position: chr25:21209222-21209112 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 558-663
Cow position: chr25:11830169-11830064 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 558-671
Cow position: chr25:14512843-14512955 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 561-663
Cow position: chr25:9990361-9990258 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 561-667
Cow position: chr25:6003261-6003155 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 71

Conread position: 561-669
Cow position: chr25:12824285-12824176 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 561-670
Cow position: chr25:14196585-14196695 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 561-672
Cow position: chr25:17712266-17712375 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 561-672
Cow position: chr25:22203960-22203849 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 97
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 561-672
Cow position: chr25:26700770-26700878 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 561-672
Cow position: chr25:33256099-33256209 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 562-667
Cow position: chr25:10156322-10156427 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 562-667
Cow position: chr25:18935144-18935038 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 562-672
Cow position: chr25:8961194-8961304 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 563-672
Cow position: chr25:37594146-37594255 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 565-667
Cow position: chr25:28188216-28188113 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 36

Conread position: 566-667
Cow position: chr25:33691289-33691389 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 566-671
Cow position: chr25:11585253-11585358 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 567-667
Cow position: chr25:9842736-9842836 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 68

Conread position: 567-667
Cow position: chr25:20402983-20402884 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 568-669
Cow position: chr25:12778797-12778694 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 570-667
Cow position: chr25:36139345-36139442 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 570-671
Cow position: chr25:12174766-12174665 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.