Cow genome map

Conread name: Ss1.1-Pig4-TMW8016A06.3

Conread position: 381-533
Cow position: chr27:12191111-12191263 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 130, 22

Conread position: 395-667
Cow position: chr27:3554689-3554422 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 178
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 176, 30

Conread position: 402-497
Cow position: chr27:24227475-24227570 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 403-511
Cow position: chr27:16984104-16983994 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 95, 0

Conread position: 408-496
Cow position: chr27:7289797-7289885 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 547-667
Cow position: chr27:26313961-26314079 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 102
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 547-667
Cow position: chr27:28207036-28206916 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 548-672
Cow position: chr27:23083792-23083667 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 14, 9

Conread position: 551-671
Cow position: chr27:28018571-28018451 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 83

Conread position: 551-671
Cow position: chr27:28921662-28921782 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 552-651
Cow position: chr27:26856978-26857075 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 552-664
Cow position: chr27:20828474-20828586 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 82

Conread position: 552-669
Cow position: chr27:15342895-15343009 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 15, 68

Conread position: 552-672
Cow position: chr27:16960430-16960309 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 554-654
Cow position: chr27:2901010-2901110 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-655
Cow position: chr27:22171530-22171429 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 54

Conread position: 554-655
Cow position: chr27:25809292-25809392 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 554-656
Cow position: chr27:15272137-15272035 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 554-657
Cow position: chr27:23472487-23472384 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 91
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 42, 16

Conread position: 554-658
Cow position: chr27:815596-815492 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-658
Cow position: chr27:4385834-4385939 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 92
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 554-659
Cow position: chr27:6074147-6074043 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 554-659
Cow position: chr27:27019869-27019974 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 554-660
Cow position: chr27:1768404-1768508 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 554-660
Cow position: chr27:27449203-27449309 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 78

Conread position: 554-661
Cow position: chr27:27038611-27038719 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 13, 42

Conread position: 554-663
Cow position: chr27:15858860-15858968 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 554-663
Cow position: chr27:22220785-22220676 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 554-663
Cow position: chr27:26427897-26428006 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-666
Cow position: chr27:26413024-26413136 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr27:7412614-7412501 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 97
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr27:11255744-11255632 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 554-667
Cow position: chr27:14670151-14670262 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 554-667
Cow position: chr27:15454444-15454330 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 554-667
Cow position: chr27:16620222-16620110 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 554-667
Cow position: chr27:18507863-18507750 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 554-667
Cow position: chr27:25411284-25411401 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 554-667
Cow position: chr27:27843761-27843874 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 554-669
Cow position: chr27:23502695-23502580 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 554-669
Cow position: chr27:23930195-23930081 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 554-669
Cow position: chr27:24445925-24446040 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 98
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 554-670
Cow position: chr27:15927003-15926887 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 554-670
Cow position: chr27:23452711-23452595 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 554-671
Cow position: chr27:1173312-1173430 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 112, 0

Conread position: 554-671
Cow position: chr27:8962038-8962154 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 554-671
Cow position: chr27:9090570-9090687 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 554-671
Cow position: chr27:10980095-10979978 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 554-671
Cow position: chr27:11535866-11535982 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 554-671
Cow position: chr27:14902418-14902534 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 554-671
Cow position: chr27:21350784-21350901 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 554-671
Cow position: chr27:22035142-22035259 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 101
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 554-671
Cow position: chr27:22440373-22440254 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 554-671
Cow position: chr27:24331957-24331840 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-671
Cow position: chr27:26398028-26398144 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 101
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 554-671
Cow position: chr27:28931556-28931673 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 554-671
Cow position: chr27:30362474-30362358 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 83, 70

Conread position: 554-671
Cow position: chr27:30868509-30868624 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 554-672
Cow position: chr27:2930365-2930483 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 81, 70

Conread position: 554-672
Cow position: chr27:6550682-6550564 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 103
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr27:7289878-7289996 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr27:7958604-7958720 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 107, 0

Conread position: 554-672
Cow position: chr27:12191218-12191336 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr27:12516428-12516310 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 84, 7

Conread position: 554-672
Cow position: chr27:16823045-16822927 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr27:18922681-18922564 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 554-672
Cow position: chr27:21668894-21669011 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 554-672
Cow position: chr27:22426599-22426715 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 554-672
Cow position: chr27:22608905-22609023 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr27:22723475-22723593 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr27:23595504-23595386 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr27:24014510-24014627 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 102
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 554-672
Cow position: chr27:24227562-24227680 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 554-672
Cow position: chr27:25783833-25783715 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 92, 45

Conread position: 554-672
Cow position: chr27:27141823-27141707 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 555-659
Cow position: chr27:16513652-16513755 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 555-660
Cow position: chr27:6541855-6541750 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 555-660
Cow position: chr27:9978057-9977952 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 555-667
Cow position: chr27:299153-299265 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 555-667
Cow position: chr27:22293482-22293594 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 97
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 555-672
Cow position: chr27:11081426-11081310 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 84, 61

Conread position: 555-672
Cow position: chr27:11815529-11815646 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 556-672
Cow position: chr27:21393275-21393391 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 556-672
Cow position: chr27:23483454-23483337 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 80

Conread position: 556-672
Cow position: chr27:25380220-25380104 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 556-672
Cow position: chr27:28518514-28518399 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 557-667
Cow position: chr27:4673249-4673139 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 557-671
Cow position: chr27:26436646-26436759 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 558-667
Cow position: chr27:6500292-6500183 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 560-667
Cow position: chr27:23070135-23070241 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 560-672
Cow position: chr27:536682-536571 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 56

Conread position: 561-667
Cow position: chr27:8942459-8942565 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 561-672
Cow position: chr27:2011879-2011989 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 561-672
Cow position: chr27:13638768-13638879 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 562-668
Cow position: chr27:6523269-6523163 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 85
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 563-671
Cow position: chr27:1183654-1183761 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 565-672
Cow position: chr27:8291790-8291898 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 565-672
Cow position: chr27:27040829-27040721 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 569-667
Cow position: chr27:13198133-13198035 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 33

Conread position: 579-671
Cow position: chr27:18215262-18215170 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 582-672
Cow position: chr27:26625329-26625238 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 81
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.