Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8023H12.5 |
| Conread position: | 95-346 |
| Cow position: | chr11:20525338-20525089 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 167, 75 |
| Conread position: | 109-263 |
| Cow position: | chr11:647534-647687 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 109-353 |
| Cow position: | chr11:58426803-58427044 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 153, 146 |
| Conread position: | 110-358 |
| Cow position: | chr11:61515613-61515869 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 153, 137 |
| Conread position: | 110-423 |
| Cow position: | chr11:17000092-16999786 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 111-312 |
| Cow position: | chr11:59956395-59956195 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 128, 28 |
| Conread position: | 112-301 |
| Cow position: | chr11:73322184-73321994 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 183 |
| Conread position: | 112-370 |
| Cow position: | chr11:28639415-28639154 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 18 |
| Conread position: | 112-377 |
| Cow position: | chr11:10120672-10120931 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 133, 69 |
| Conread position: | 113-314 |
| Cow position: | chr11:34690212-34690415 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 113-334 |
| Cow position: | chr11:56111180-56110962 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 132, 61 |
| Conread position: | 114-278 |
| Cow position: | chr11:11772678-11772843 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 114-291 |
| Cow position: | chr11:75154948-75155126 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 131, 43 |
| Conread position: | 114-377 |
| Cow position: | chr11:21835037-21835295 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 148, 12 |
| Conread position: | 115-299 |
| Cow position: | chr11:64699930-64700114 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 130, 108 |
| Conread position: | 115-364 |
| Cow position: | chr11:84175601-84175351 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 147, 121 |
| Conread position: | 120-305 |
| Cow position: | chr11:55098317-55098133 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 143, 124 |
| Conread position: | 121-307 |
| Cow position: | chr11:56194688-56194873 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 118, 69 |
| Conread position: | 121-323 |
| Cow position: | chr11:11487519-11487315 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 126-370 |
| Cow position: | chr11:46034339-46034573 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 136, 55 |
| Conread position: | 127-334 |
| Cow position: | chr11:55754615-55754411 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 118, 96 |
| Conread position: | 128-293 |
| Cow position: | chr11:18337135-18337301 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 128-300 |
| Cow position: | chr11:12251849-12251677 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 88, 106 |
| Conread position: | 128-429 |
| Cow position: | chr11:44024335-44024042 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 111, 29 |
| Conread position: | 129-344 |
| Cow position: | chr11:42515105-42514887 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 90, 25 |
| Conread position: | 129-418 |
| Cow position: | chr11:10170970-10170685 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 116, 9 |
| Conread position: | 130-297 |
| Cow position: | chr11:43847194-43847362 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 119 |
| Conread position: | 130-377 |
| Cow position: | chr11:37780328-37780091 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 235, 117 |
| Conread position: | 138-336 |
| Cow position: | chr11:56858225-56858029 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 122, 157 |
| Conread position: | 138-429 |
| Cow position: | chr11:51480051-51479768 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 104, 93 |
Show alignments to all cow chromosomes.