Cow genome map

Conread name: Ss1.1-Pig4-TMW8025P08.5

Conread position: 41-249
Cow position: chr1:30672591-30672802 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 73-255
Cow position: chr1:36528939-36529122 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 73-404
Cow position: chr1:68334169-68333829 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 235
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 189

Conread position: 92-253
Cow position: chr1:8844208-8844368 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 92-636
Cow position: chr1:69996003-69996574 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 364
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 173, 96

Conread position: 94-216
Cow position: chr1:50910765-50910643 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 94-216
Cow position: chr1:79136975-79136851 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 107

Conread position: 94-233
Cow position: chr1:33172105-33171967 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 94-233
Cow position: chr1:48587489-48587350 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 73, 86

Conread position: 94-235
Cow position: chr1:69265450-69265591 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 89

Conread position: 94-246
Cow position: chr1:87452522-87452371 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 89, 0

Conread position: 94-248
Cow position: chr1:43428053-43427897 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 108

Conread position: 94-249
Cow position: chr1:10888445-10888287 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 119, 40

Conread position: 94-251
Cow position: chr1:42770417-42770257 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 94-252
Cow position: chr1:15229441-15229601 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 31

Conread position: 94-254
Cow position: chr1:83105616-83105776 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 94-255
Cow position: chr1:6425939-6426100 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 94-255
Cow position: chr1:13407090-13406926 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 107, 83

Conread position: 94-255
Cow position: chr1:16849297-16849458 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 94-255
Cow position: chr1:26572653-26572492 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 94-255
Cow position: chr1:42423270-42423431 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 151

Conread position: 94-255
Cow position: chr1:44511203-44511031 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 94-255
Cow position: chr1:73244268-73244429 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 94-255
Cow position: chr1:73641553-73641395 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 67, 0

Conread position: 94-255
Cow position: chr1:74880606-74880446 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 120, 0

Conread position: 94-255
Cow position: chr1:74886846-74887003 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 107, 42

Conread position: 94-255
Cow position: chr1:74899825-74899663 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 12, 132

Conread position: 94-255
Cow position: chr1:85527396-85527234 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 136
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 39, 0

Conread position: 94-258
Cow position: chr1:9521599-9521434 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 29, 98

Conread position: 94-258
Cow position: chr1:43221280-43221119 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 121, 0

Conread position: 94-258
Cow position: chr1:91076142-91076303 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 42, 0

Conread position: 94-261
Cow position: chr1:3615001-3614834 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 94-417
Cow position: chr1:13269381-13269046 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 224
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 181, 120

Conread position: 94-417
Cow position: chr1:50593481-50593816 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 181, 0

Conread position: 94-417
Cow position: chr1:53250028-53249698 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 226
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 181, 21

Conread position: 94-417
Cow position: chr1:56652552-56652226 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 171, 31

Conread position: 94-421
Cow position: chr1:31969275-31968939 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 171, 94

Conread position: 94-435
Cow position: chr1:25263361-25263690 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 228
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 165, 122

Conread position: 94-625
Cow position: chr1:71599534-71598988 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 363
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 75, 28

Conread position: 94-638
Cow position: chr1:50371050-50370476 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 165

Conread position: 94-643
Cow position: chr1:74397404-74397980 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 379
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 151, 43

Conread position: 94-643
Cow position: chr1:100065659-100065091 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 368
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 217, 12

Conread position: 95-255
Cow position: chr1:7637049-7637207 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 37, 66

Conread position: 95-255
Cow position: chr1:80714093-80713933 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 95-407
Cow position: chr1:12429877-12429577 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 205
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 111, 12

Conread position: 95-413
Cow position: chr1:90101244-90100913 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 170, 164

Conread position: 96-224
Cow position: chr1:52219023-52219151 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 94

Conread position: 96-225
Cow position: chr1:19437555-19437426 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 97
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 96-235
Cow position: chr1:11895719-11895580 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 96-243
Cow position: chr1:80670584-80670727 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 96-248
Cow position: chr1:66914043-66914195 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 96-250
Cow position: chr1:31158783-31158629 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 75, 85

Conread position: 96-255
Cow position: chr1:15492130-15491975 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 121

Conread position: 96-255
Cow position: chr1:25355349-25355513 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 96-255
Cow position: chr1:40579553-40579712 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 96-255
Cow position: chr1:47294908-47295067 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 96-255
Cow position: chr1:78300293-78300134 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 97-249
Cow position: chr1:41277368-41277216 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 97-255
Cow position: chr1:20046012-20046169 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 128
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 134, 0

Conread position: 97-255
Cow position: chr1:30912401-30912558 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 0

Conread position: 98-249
Cow position: chr1:38266407-38266255 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 83

Conread position: 98-254
Cow position: chr1:73914480-73914323 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 131
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 62, 120

Conread position: 98-255
Cow position: chr1:37556223-37556379 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 100, 14

Conread position: 98-417
Cow position: chr1:63023712-63023387 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 220
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 32, 202

Conread position: 98-666
Cow position: chr1:75904282-75903699 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 371
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 79, 309

Conread position: 99-418
Cow position: chr1:43519865-43519535 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 221
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 218, 204

Conread position: 100-255
Cow position: chr1:71346938-71346784 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 105, 21

Conread position: 105-250
Cow position: chr1:41268459-41268604 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 140, 67

Conread position: 105-255
Cow position: chr1:55435213-55435065 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 111, 0

Conread position: 109-638
Cow position: chr1:83648004-83647452 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 352
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 166, 454

Conread position: 112-235
Cow position: chr1:95786964-95786841 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 112-255
Cow position: chr1:100029990-100030133 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 114-264
Cow position: chr1:46335876-46336024 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 114-414
Cow position: chr1:99438610-99438306 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 151, 11

Conread position: 115-251
Cow position: chr1:9683299-9683168 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 125-255
Cow position: chr1:80128268-80128393 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 146-253
Cow position: chr1:26954819-26954714 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 157-435
Cow position: chr1:69210607-69210333 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 135, 74

Conread position: 274-640
Cow position: chr1:20046219-20046591 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 242
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 193

Show alignments to all cow chromosomes.