Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025P08.5 |
| Conread position: | 70-253 |
| Cow position: | chr11:25135422-25135606 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 72-255 |
| Cow position: | chr11:48696694-48696878 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 82-255 |
| Cow position: | chr11:9385702-9385528 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 94-217 |
| Cow position: | chr11:43844906-43844785 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 94-240 |
| Cow position: | chr11:77436967-77437111 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 94-243 |
| Cow position: | chr11:41562749-41562896 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 94-249 |
| Cow position: | chr11:17857130-17857285 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-251 |
| Cow position: | chr11:35240580-35240737 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 133 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-252 |
| Cow position: | chr11:64477718-64477568 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 94-253 |
| Cow position: | chr11:35150208-35150051 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 94-253 |
| Cow position: | chr11:35412060-35412220 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 39, 95 |
| Conread position: | 94-254 |
| Cow position: | chr11:40643028-40643188 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-254 |
| Cow position: | chr11:71013124-71013282 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:9714490-9714329 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:10807678-10807518 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:13887694-13887532 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:18922014-18921853 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 153, 32 |
| Conread position: | 94-255 |
| Cow position: | chr11:29622941-29622781 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:31429417-31429258 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:41424228-41424381 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:45839223-45839066 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:67435270-67435111 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 94-255 |
| Cow position: | chr11:68025510-68025351 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 94-255 |
| Cow position: | chr11:72462280-72462439 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:74193446-74193285 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 94-255 |
| Cow position: | chr11:75370127-75370290 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:76603364-76603526 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:84742309-84742464 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 94-255 |
| Cow position: | chr11:85679994-85680155 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 94-257 |
| Cow position: | chr11:37442021-37442182 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 94-264 |
| Cow position: | chr11:13972362-13972193 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 153, 125 |
| Conread position: | 94-405 |
| Cow position: | chr11:16069712-16069395 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 76, 9 |
| Conread position: | 94-407 |
| Cow position: | chr11:45295967-45296274 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 94-412 |
| Cow position: | chr11:68276432-68276765 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 94-413 |
| Cow position: | chr11:20572882-20572556 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 165 |
| Conread position: | 94-414 |
| Cow position: | chr11:65682600-65682930 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 171, 165 |
| Conread position: | 94-418 |
| Cow position: | chr11:52310966-52310646 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 94-447 |
| Cow position: | chr11:79098518-79098157 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 171, 18 |
| Conread position: | 94-525 |
| Cow position: | chr11:39426998-39426572 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 94-611 |
| Cow position: | chr11:34572398-34571858 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 107 |
| Conread position: | 94-638 |
| Cow position: | chr11:16884639-16884077 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 101 |
| Conread position: | 95-253 |
| Cow position: | chr11:64726391-64726236 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 96-255 |
| Cow position: | chr11:12006102-12006260 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 96-255 |
| Cow position: | chr11:80737510-80737669 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-417 |
| Cow position: | chr11:56106655-56106333 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 230 |
| Conread position: | 96-579 |
| Cow position: | chr11:59948672-59948174 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 326 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 169, 49 |
| Conread position: | 97-249 |
| Cow position: | chr11:40500580-40500732 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 97-255 |
| Cow position: | chr11:40491928-40492086 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-228 |
| Cow position: | chr11:16685828-16685960 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 121 |
| Conread position: | 98-249 |
| Cow position: | chr11:52889320-52889474 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 137 |
| Conread position: | 98-251 |
| Cow position: | chr11:52248333-52248487 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 98-255 |
| Cow position: | chr11:3280418-3280570 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 102-417 |
| Cow position: | chr11:35232264-35232578 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 190, 79 |
| Conread position: | 104-261 |
| Cow position: | chr11:8717750-8717595 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 68, 98 |
| Conread position: | 108-412 |
| Cow position: | chr11:56706339-56706656 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 90 |
| Conread position: | 109-620 |
| Cow position: | chr11:84810614-84811156 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 342 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 112-588 |
| Cow position: | chr11:35116737-35116253 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 156 |
| Conread position: | 114-252 |
| Cow position: | chr11:68662145-68662283 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 114-264 |
| Cow position: | chr11:70194014-70193866 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 120-638 |
| Cow position: | chr11:50468205-50467663 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 356 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 122, 81 |
| Conread position: | 122-412 |
| Cow position: | chr11:40298935-40298645 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 159, 12 |
| Conread position: | 132-255 |
| Cow position: | chr11:61291093-61290970 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-255 |
| Cow position: | chr11:49596133-49596252 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 138-255 |
| Cow position: | chr11:59156326-59156443 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 142-255 |
| Cow position: | chr11:66485729-66485841 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 142-411 |
| Cow position: | chr11:54316608-54316882 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 126, 48 |
| Conread position: | 156-255 |
| Cow position: | chr11:28022742-28022841 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 348-644 |
| Cow position: | chr11:53239754-53240063 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 419-638 |
| Cow position: | chr11:27955605-27955819 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 48 |
Show alignments to all cow chromosomes.