Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025P08.5 |
| Conread position: | 44-255 |
| Cow position: | chr2:64204398-64204608 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 78-248 |
| Cow position: | chr2:24940481-24940314 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 79-196 |
| Cow position: | chr2:40373552-40373436 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 80-253 |
| Cow position: | chr2:6458554-6458730 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 94-243 |
| Cow position: | chr2:33183244-33183392 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 94-252 |
| Cow position: | chr2:59204865-59205016 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 94-253 |
| Cow position: | chr2:1661704-1661864 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 94-254 |
| Cow position: | chr2:21474496-21474335 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:11956533-11956694 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:14460145-14459986 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:15691263-15691425 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 94-255 |
| Cow position: | chr2:23042842-23043009 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 65 |
| Conread position: | 94-255 |
| Cow position: | chr2:24055643-24055802 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:31870478-31870320 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:43228707-43228867 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:43936700-43936857 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 96, 31 |
| Conread position: | 94-255 |
| Cow position: | chr2:54055499-54055661 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:54424826-54424662 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 94-255 |
| Cow position: | chr2:77709277-77709434 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:80440028-80440189 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:82683782-82683625 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:83248359-83248200 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 94-255 |
| Cow position: | chr2:86003435-86003592 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 94-257 |
| Cow position: | chr2:72929876-72929714 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 94-258 |
| Cow position: | chr2:34664507-34664344 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 94-258 |
| Cow position: | chr2:46447305-46447142 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 94-264 |
| Cow position: | chr2:11625084-11624921 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 94-264 |
| Cow position: | chr2:20275174-20275342 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 94-264 |
| Cow position: | chr2:21025931-21026100 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 114, 96 |
| Conread position: | 94-264 |
| Cow position: | chr2:58008677-58008511 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 94-392 |
| Cow position: | chr2:14405771-14406084 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 128, 95 |
| Conread position: | 94-417 |
| Cow position: | chr2:16723678-16724017 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 39, 168 |
| Conread position: | 94-417 |
| Cow position: | chr2:29746436-29746114 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 116 |
| Conread position: | 94-417 |
| Cow position: | chr2:49307978-49308298 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 215, 57 |
| Conread position: | 94-418 |
| Cow position: | chr2:3905891-3905554 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 187, 103 |
| Conread position: | 94-418 |
| Cow position: | chr2:72665478-72665817 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 130, 25 |
| Conread position: | 94-629 |
| Cow position: | chr2:15256938-15256381 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 358 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 171, 153 |
| Conread position: | 95-264 |
| Cow position: | chr2:12688093-12687931 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 95-417 |
| Cow position: | chr2:56713996-56713668 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 170, 34 |
| Conread position: | 96-242 |
| Cow position: | chr2:52391107-52390959 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 96-251 |
| Cow position: | chr2:5477827-5477672 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 96-255 |
| Cow position: | chr2:27164014-27163861 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 96-255 |
| Cow position: | chr2:55473959-55473799 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 96-255 |
| Cow position: | chr2:64221896-64221737 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 96-255 |
| Cow position: | chr2:64505658-64505498 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 96-627 |
| Cow position: | chr2:48795759-48795215 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 341 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 186, 30 |
| Conread position: | 98-249 |
| Cow position: | chr2:70934613-70934462 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 98-628 |
| Cow position: | chr2:41783969-41784479 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 341 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 158, 75 |
| Conread position: | 100-255 |
| Cow position: | chr2:84489583-84489428 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 100-264 |
| Cow position: | chr2:84442744-84442902 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 102-226 |
| Cow position: | chr2:62262855-62262978 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 102-250 |
| Cow position: | chr2:76663881-76664024 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 102-255 |
| Cow position: | chr2:1821176-1821026 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 103-638 |
| Cow position: | chr2:14792443-14793006 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 377 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 148, 157 |
| Conread position: | 104-255 |
| Cow position: | chr2:54901376-54901526 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 105-255 |
| Cow position: | chr2:8108024-8108174 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 105-255 |
| Cow position: | chr2:77242474-77242624 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 106-255 |
| Cow position: | chr2:25718417-25718564 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 106-415 |
| Cow position: | chr2:72244694-72244376 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 139, 213 |
| Conread position: | 114-253 |
| Cow position: | chr2:57405961-57405827 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 132-250 |
| Cow position: | chr2:10881918-10882035 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 134-249 |
| Cow position: | chr2:35691252-35691137 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-255 |
| Cow position: | chr2:4945297-4945174 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 274-629 |
| Cow position: | chr2:63734055-63734406 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 122 |
Show alignments to all cow chromosomes.