Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025P08.5 |
| Conread position: | 62-251 |
| Cow position: | chr24:11937451-11937262 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 5, 139 |
| Conread position: | 73-252 |
| Cow position: | chr24:10574998-10574820 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 94-240 |
| Cow position: | chr24:6223025-6223171 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-241 |
| Cow position: | chr24:14180567-14180420 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-249 |
| Cow position: | chr24:6763186-6763336 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 94-249 |
| Cow position: | chr24:7342500-7342653 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 94-249 |
| Cow position: | chr24:38620286-38620441 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 132, 107 |
| Conread position: | 94-253 |
| Cow position: | chr24:17216388-17216234 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 94-253 |
| Cow position: | chr24:38811952-38811796 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 94-255 |
| Cow position: | chr24:5539313-5539474 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 103 |
| Conread position: | 94-255 |
| Cow position: | chr24:11957177-11957016 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chr24:13796367-13796210 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 94-255 |
| Cow position: | chr24:16580295-16580454 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 99 |
| Conread position: | 94-255 |
| Cow position: | chr24:30557123-30556961 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 94-255 |
| Cow position: | chr24:31185473-31185634 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chr24:35845450-35845291 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 94-255 |
| Cow position: | chr24:39048652-39048487 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 94-255 |
| Cow position: | chr24:41240228-41240384 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 94-258 |
| Cow position: | chr24:39433632-39433473 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 94-264 |
| Cow position: | chr24:34482522-34482691 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 94-332 |
| Cow position: | chr24:33012883-33013116 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 167 |
| Conread position: | 94-418 |
| Cow position: | chr24:854326-853995 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 94-418 |
| Cow position: | chr24:5260192-5260532 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 22, 162 |
| Conread position: | 94-418 |
| Cow position: | chr24:21555522-21555855 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 188, 94 |
| Conread position: | 94-418 |
| Cow position: | chr24:40692932-40693247 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 206, 95 |
| Conread position: | 94-525 |
| Cow position: | chr24:20120557-20120112 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 139, 165 |
| Conread position: | 94-606 |
| Cow position: | chr24:30278234-30278762 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 171, 57 |
| Conread position: | 94-628 |
| Cow position: | chr24:22643415-22643972 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 367 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 193, 153 |
| Conread position: | 95-255 |
| Cow position: | chr24:4038929-4039081 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 95-255 |
| Cow position: | chr24:9491787-9491627 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-253 |
| Cow position: | chr24:20326339-20326496 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-255 |
| Cow position: | chr24:16537215-16537056 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-255 |
| Cow position: | chr24:26901750-26901910 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 96-255 |
| Cow position: | chr24:42915990-42915833 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 96-308 |
| Cow position: | chr24:33010594-33010382 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 147, 37 |
| Conread position: | 96-417 |
| Cow position: | chr24:6203530-6203862 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 139, 49 |
| Conread position: | 97-255 |
| Cow position: | chr24:28784508-28784666 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-255 |
| Cow position: | chr24:6054704-6054548 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 99-255 |
| Cow position: | chr24:2717792-2717946 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 99-264 |
| Cow position: | chr24:37454118-37453955 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 102-254 |
| Cow position: | chr24:26278001-26278148 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 102-255 |
| Cow position: | chr24:9306730-9306880 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 103-258 |
| Cow position: | chr24:13000297-13000145 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 104-251 |
| Cow position: | chr24:27607262-27607115 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-417 |
| Cow position: | chr24:18381508-18381182 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 73, 290 |
| Conread position: | 109-252 |
| Cow position: | chr24:8023988-8023845 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-255 |
| Cow position: | chr24:25719586-25719443 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 114-248 |
| Cow position: | chr24:26223802-26223936 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 115-253 |
| Cow position: | chr24:37432019-37431881 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 115-255 |
| Cow position: | chr24:35579141-35579284 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 90 |
| Conread position: | 119-255 |
| Cow position: | chr24:24272689-24272553 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-255 |
| Cow position: | chr24:4821302-4821172 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 133-418 |
| Cow position: | chr24:30391604-30391319 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 118 |
| Conread position: | 295-637 |
| Cow position: | chr24:39433221-39432877 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 192 |
Show alignments to all cow chromosomes.