Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025P08.5 |
| Conread position: | 72-412 |
| Cow position: | chr3:23921160-23920815 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 148 |
| Conread position: | 91-255 |
| Cow position: | chr3:27531138-27530974 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-245 |
| Cow position: | chr3:76139557-76139401 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 94-249 |
| Cow position: | chr3:58104931-58105091 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 94-251 |
| Cow position: | chr3:45368736-45368583 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 94-253 |
| Cow position: | chr3:28947219-28947060 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-253 |
| Cow position: | chr3:64657699-64657858 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 120, 35 |
| Conread position: | 94-253 |
| Cow position: | chr3:69951372-69951530 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 84 |
| Conread position: | 94-255 |
| Cow position: | chr3:14802086-14802249 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 94-255 |
| Cow position: | chr3:25169807-25169966 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 82, 22 |
| Conread position: | 94-255 |
| Cow position: | chr3:31524386-31524543 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 94-255 |
| Cow position: | chr3:38791401-38791241 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 94-255 |
| Cow position: | chr3:39971702-39971541 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chr3:50107509-50107352 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 94-255 |
| Cow position: | chr3:54680103-54679943 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 94-255 |
| Cow position: | chr3:65961528-65961690 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 94-255 |
| Cow position: | chr3:68344585-68344418 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 94-264 |
| Cow position: | chr3:45398706-45398874 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 94-264 |
| Cow position: | chr3:66134161-66133992 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 94-264 |
| Cow position: | chr3:67997488-67997321 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 94-326 |
| Cow position: | chr3:67282486-67282728 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 94-339 |
| Cow position: | chr3:54119472-54119224 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 171, 165 |
| Conread position: | 94-412 |
| Cow position: | chr3:30335209-30335540 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 172, 42 |
| Conread position: | 94-413 |
| Cow position: | chr3:7109171-7109505 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 107, 16 |
| Conread position: | 94-413 |
| Cow position: | chr3:17709106-17708784 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 171, 43 |
| Conread position: | 94-416 |
| Cow position: | chr3:27690097-27690423 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 171, 50 |
| Conread position: | 94-417 |
| Cow position: | chr3:21652663-21652994 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 208, 178 |
| Conread position: | 94-417 |
| Cow position: | chr3:43483460-43483791 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 144, 95 |
| Conread position: | 94-612 |
| Cow position: | chr3:15201510-15202049 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 354 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 45, 166 |
| Conread position: | 94-627 |
| Cow position: | chr3:59465684-59466225 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 181, 226 |
| Conread position: | 94-636 |
| Cow position: | chr3:84964752-84965295 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 356 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 94-643 |
| Cow position: | chr3:30366280-30365706 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 374 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 95-253 |
| Cow position: | chr3:9780431-9780273 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-255 |
| Cow position: | chr3:43901800-43901961 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 96-255 |
| Cow position: | chr3:46852617-46852774 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 96-255 |
| Cow position: | chr3:60620292-60620139 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 96-255 |
| Cow position: | chr3:82937165-82937324 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-619 |
| Cow position: | chr3:57968846-57969393 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 98-249 |
| Cow position: | chr3:36727704-36727855 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-258 |
| Cow position: | chr3:37813274-37813114 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-258 |
| Cow position: | chr3:58443702-58443538 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 102-637 |
| Cow position: | chr3:48997719-48998284 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 153, 220 |
| Conread position: | 103-629 |
| Cow position: | chr3:40108199-40107658 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 156 |
| Conread position: | 105-255 |
| Cow position: | chr3:14051215-14051364 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 105-413 |
| Cow position: | chr3:30800629-30800314 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 186, 27 |
| Conread position: | 118-255 |
| Cow position: | chr3:21051087-21051224 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-255 |
| Cow position: | chr3:46086188-46086321 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-402 |
| Cow position: | chr3:81952928-81952643 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 167, 63 |
| Conread position: | 130-248 |
| Cow position: | chr3:76842935-76843052 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 136-258 |
| Cow position: | chr3:33709403-33709522 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 139-250 |
| Cow position: | chr3:47066479-47066369 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 141-627 |
| Cow position: | chr3:42216799-42216286 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 126, 366 |
| Conread position: | 277-638 |
| Cow position: | chr3:56162257-56162615 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 136, 80 |
Show alignments to all cow chromosomes.