Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025P08.5 |
| Conread position: | 66-624 |
| Cow position: | chr4:8956970-8957561 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 364 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 72-630 |
| Cow position: | chr4:47457773-47458317 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 362 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 108, 90 |
| Conread position: | 73-255 |
| Cow position: | chr4:27872789-27872610 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 92-251 |
| Cow position: | chr4:51981299-51981456 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 153, 5 |
| Conread position: | 92-258 |
| Cow position: | chr4:58880291-58880125 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 94-193 |
| Cow position: | chr4:59556462-59556363 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-219 |
| Cow position: | chr4:35000126-35000001 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-239 |
| Cow position: | chr4:2670841-2670985 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 94-251 |
| Cow position: | chr4:65142488-65142327 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 94-253 |
| Cow position: | chr4:26223231-26223076 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 87 |
| Conread position: | 94-255 |
| Cow position: | chr4:6612713-6612554 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 94-255 |
| Cow position: | chr4:9896990-9896825 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 94-255 |
| Cow position: | chr4:13468825-13468666 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 94-255 |
| Cow position: | chr4:16246497-16246335 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 94-255 |
| Cow position: | chr4:28286823-28286979 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 94-255 |
| Cow position: | chr4:31937061-31937217 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 94-255 |
| Cow position: | chr4:33295876-33295725 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 94-255 |
| Cow position: | chr4:47704681-47704841 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 94-255 |
| Cow position: | chr4:49683074-49682931 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 94-264 |
| Cow position: | chr4:7679004-7678840 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 94-264 |
| Cow position: | chr4:35122431-35122272 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 94-326 |
| Cow position: | chr4:61080722-61080957 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 94-339 |
| Cow position: | chr4:10133684-10133929 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 102 |
| Conread position: | 94-413 |
| Cow position: | chr4:14511938-14511609 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 171, 22 |
| Conread position: | 94-417 |
| Cow position: | chr4:39222556-39222889 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 141, 22 |
| Conread position: | 94-417 |
| Cow position: | chr4:42398504-42398173 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 107, 12 |
| Conread position: | 94-580 |
| Cow position: | chr4:44380120-44379608 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 336 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 94-638 |
| Cow position: | chr4:34008071-34007495 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 374 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 94-638 |
| Cow position: | chr4:54828727-54828167 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 200, 94 |
| Conread position: | 95-255 |
| Cow position: | chr4:45951928-45952088 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 108, 97 |
| Conread position: | 95-417 |
| Cow position: | chr4:44047002-44047311 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 216, 5 |
| Conread position: | 95-636 |
| Cow position: | chr4:19451418-19450846 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 372 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 485 |
| Conread position: | 96-249 |
| Cow position: | chr4:11662844-11662996 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 96-249 |
| Cow position: | chr4:57206085-57206238 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 96-255 |
| Cow position: | chr4:11870041-11869881 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 153 |
| Conread position: | 96-264 |
| Cow position: | chr4:43066000-43066161 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 96-344 |
| Cow position: | chr4:38315849-38315599 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 204, 196 |
| Conread position: | 96-593 |
| Cow position: | chr4:40650199-40649671 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 98-254 |
| Cow position: | chr4:61128739-61128585 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 98-254 |
| Cow position: | chr4:66100264-66100112 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 98-255 |
| Cow position: | chr4:3720600-3720441 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 99-255 |
| Cow position: | chr4:342620-342464 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 106-253 |
| Cow position: | chr4:35039283-35039135 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 106-407 |
| Cow position: | chr4:34020987-34021296 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 153, 24 |
| Conread position: | 111-251 |
| Cow position: | chr4:9887111-9886970 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 111-253 |
| Cow position: | chr4:1309647-1309789 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-644 |
| Cow position: | chr4:19688732-19689286 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 149, 169 |
| Conread position: | 115-258 |
| Cow position: | chr4:46579534-46579674 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 116-255 |
| Cow position: | chr4:23834200-23834341 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 117-404 |
| Cow position: | chr4:60653182-60653465 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 148, 142 |
| Conread position: | 118-255 |
| Cow position: | chr4:29134236-29134100 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 120-254 |
| Cow position: | chr4:58002412-58002546 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 122-255 |
| Cow position: | chr4:58695538-58695406 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 125-255 |
| Cow position: | chr4:18309353-18309483 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-255 |
| Cow position: | chr4:12828750-12828878 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 132-254 |
| Cow position: | chr4:50126083-50126203 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 133-258 |
| Cow position: | chr4:7737419-7737544 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-255 |
| Cow position: | chr4:66635470-66635348 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 278-629 |
| Cow position: | chr4:6513487-6513823 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 96 |
| Conread position: | 287-768 |
| Cow position: | chr4:54194433-54193950 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 203 |
| Conread position: | 413-629 |
| Cow position: | chr4:23825193-23824976 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 413-633 |
| Cow position: | chr4:40850745-40850965 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 128, 65 |
| Conread position: | 419-768 |
| Cow position: | chr4:66161965-66161612 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 420-638 |
| Cow position: | chr4:29209685-29209909 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 475-669 |
| Cow position: | chr4:21400033-21399839 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 165 |
Show alignments to all cow chromosomes.