Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025P08.5 |
| Conread position: | 73-629 |
| Cow position: | chr5:48455569-48456139 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 79-255 |
| Cow position: | chr5:13989368-13989192 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 91-255 |
| Cow position: | chr5:74427098-74427262 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-207 |
| Cow position: | chr5:73252837-73252723 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 94-248 |
| Cow position: | chr5:2237869-2237715 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-249 |
| Cow position: | chr5:5393669-5393823 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 94-249 |
| Cow position: | chr5:13410415-13410570 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-253 |
| Cow position: | chr5:30793393-30793552 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chr5:9953793-9953635 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 94-255 |
| Cow position: | chr5:12693822-12693984 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 97 |
| Conread position: | 94-255 |
| Cow position: | chr5:14708240-14708398 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 94-255 |
| Cow position: | chr5:24640103-24639937 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 94-255 |
| Cow position: | chr5:25638484-25638327 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 129, 76 |
| Conread position: | 94-255 |
| Cow position: | chr5:37715039-37714880 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 94-255 |
| Cow position: | chr5:42232155-42231997 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 94-255 |
| Cow position: | chr5:45168199-45168039 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 94-255 |
| Cow position: | chr5:45608833-45608677 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 94-255 |
| Cow position: | chr5:73966805-73966641 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 139, 77 |
| Conread position: | 94-257 |
| Cow position: | chr5:41757497-41757657 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 94-264 |
| Cow position: | chr5:49153896-49153729 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 94-264 |
| Cow position: | chr5:57966089-57965920 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 94-264 |
| Cow position: | chr5:62362776-62362946 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 143, 166 |
| Conread position: | 94-351 |
| Cow position: | chr5:68166077-68165813 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 62, 169 |
| Conread position: | 94-411 |
| Cow position: | chr5:63072718-63072407 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 229, 57 |
| Conread position: | 94-417 |
| Cow position: | chr5:5309039-5309370 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 94-417 |
| Cow position: | chr5:11349705-11350039 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 181, 27 |
| Conread position: | 94-588 |
| Cow position: | chr5:36223433-36222944 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 315 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 171, 40 |
| Conread position: | 94-629 |
| Cow position: | chr5:47593658-47593091 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 362 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 172, 72 |
| Conread position: | 95-249 |
| Cow position: | chr5:41200555-41200401 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-249 |
| Cow position: | chr5:56677916-56678070 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 95-260 |
| Cow position: | chr5:73141487-73141317 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 96-249 |
| Cow position: | chr5:42202120-42202273 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 86 |
| Conread position: | 96-255 |
| Cow position: | chr5:59034901-59034747 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 96-255 |
| Cow position: | chr5:69626441-69626599 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 96-407 |
| Cow position: | chr5:55112798-55113119 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 169, 163 |
| Conread position: | 96-417 |
| Cow position: | chr5:67623694-67624022 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 40, 137 |
| Conread position: | 98-237 |
| Cow position: | chr5:18478983-18479121 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 98-249 |
| Cow position: | chr5:15764966-15765115 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 98-253 |
| Cow position: | chr5:74282850-74282697 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 98-255 |
| Cow position: | chr5:42918656-42918495 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 98-255 |
| Cow position: | chr5:64615571-64615727 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 98-415 |
| Cow position: | chr5:4438247-4438567 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 103, 135 |
| Conread position: | 99-255 |
| Cow position: | chr5:20775862-20775711 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 100-251 |
| Cow position: | chr5:17887953-17887800 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 101-249 |
| Cow position: | chr5:6064090-6063938 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 101-629 |
| Cow position: | chr5:70289329-70288793 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 133, 36 |
| Conread position: | 102-255 |
| Cow position: | chr5:12327375-12327225 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 102-265 |
| Cow position: | chr5:76049810-76049650 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 104-242 |
| Cow position: | chr5:49070233-49070095 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 105-250 |
| Cow position: | chr5:65418052-65418191 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 105-255 |
| Cow position: | chr5:39468478-39468629 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 105-767 |
| Cow position: | chr5:67423462-67422752 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 448 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 107-418 |
| Cow position: | chr5:3562793-3563112 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 144, 219 |
| Conread position: | 108-258 |
| Cow position: | chr5:52497165-52497017 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 116-264 |
| Cow position: | chr5:68531441-68531587 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 117-255 |
| Cow position: | chr5:40709110-40709248 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 118-247 |
| Cow position: | chr5:68487517-68487644 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 128-264 |
| Cow position: | chr5:51943281-51943417 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 96, 132 |
| Conread position: | 132-395 |
| Cow position: | chr5:49817589-49817860 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 133, 87 |
| Conread position: | 133-255 |
| Cow position: | chr5:4191558-4191680 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 137-258 |
| Cow position: | chr5:3632636-3632514 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 142-418 |
| Cow position: | chr5:44635429-44635721 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 140, 11 |
| Conread position: | 274-627 |
| Cow position: | chr5:3562988-3563350 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 412-669 |
| Cow position: | chr5:54171173-54171430 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 413-638 |
| Cow position: | chr5:25637856-25637626 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 414-629 |
| Cow position: | chr5:18881673-18881457 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 81, 160 |
Show alignments to all cow chromosomes.