Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025P08.5 |
| Conread position: | 84-253 |
| Cow position: | chr6:27138222-27138055 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 93-255 |
| Cow position: | chr6:53133043-53132886 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 143, 39 |
| Conread position: | 94-212 |
| Cow position: | chr6:48669560-48669442 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-236 |
| Cow position: | chr6:48473391-48473534 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 94-252 |
| Cow position: | chr6:14165142-14164987 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 94-252 |
| Cow position: | chr6:38981901-38981744 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 94-253 |
| Cow position: | chr6:49721135-49721296 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 94-254 |
| Cow position: | chr6:30514179-30514340 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 94-255 |
| Cow position: | chr6:17172192-17172357 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 162 |
| Conread position: | 94-255 |
| Cow position: | chr6:18462836-18462675 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chr6:31850362-31850201 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chr6:66379975-66380134 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 94-255 |
| Cow position: | chr6:66514817-66514976 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 94-255 |
| Cow position: | chr6:66519774-66519933 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 107, 73 |
| Conread position: | 94-259 |
| Cow position: | chr6:28337654-28337815 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 94-264 |
| Cow position: | chr6:63761962-63761789 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 12, 169 |
| Conread position: | 94-270 |
| Cow position: | chr6:22272760-22272591 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 94-405 |
| Cow position: | chr6:47526988-47527307 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 148, 107 |
| Conread position: | 94-409 |
| Cow position: | chr6:6039536-6039859 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 171, 120 |
| Conread position: | 94-413 |
| Cow position: | chr6:1525821-1526140 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 171, 30 |
| Conread position: | 94-417 |
| Cow position: | chr6:7817267-7817577 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 94-417 |
| Cow position: | chr6:35248405-35248731 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 33, 165 |
| Conread position: | 94-417 |
| Cow position: | chr6:47532385-47532703 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 242, 65 |
| Conread position: | 94-421 |
| Cow position: | chr6:36467722-36468051 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 94-629 |
| Cow position: | chr6:23008488-23007928 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 356 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 162, 225 |
| Conread position: | 95-255 |
| Cow position: | chr6:41077525-41077686 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 95-258 |
| Cow position: | chr6:11412717-11412559 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 95-535 |
| Cow position: | chr6:24338711-24339159 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 51 |
| Conread position: | 96-244 |
| Cow position: | chr6:34617173-34617030 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 96-249 |
| Cow position: | chr6:55845528-55845678 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 96-255 |
| Cow position: | chr6:26632529-26632377 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 96-255 |
| Cow position: | chr6:53380837-53380993 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 96-417 |
| Cow position: | chr6:36826328-36826664 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 186, 20 |
| Conread position: | 96-670 |
| Cow position: | chr6:29503607-29504182 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 106 |
| Conread position: | 98-253 |
| Cow position: | chr6:54735000-54735157 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 98-264 |
| Cow position: | chr6:26867998-26868163 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 119, 115 |
| Conread position: | 98-270 |
| Cow position: | chr6:38915310-38915481 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 98-344 |
| Cow position: | chr6:54079833-54080083 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 145, 101 |
| Conread position: | 100-253 |
| Cow position: | chr6:46263954-46263805 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 100-255 |
| Cow position: | chr6:23811276-23811431 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 106-255 |
| Cow position: | chr6:18029646-18029499 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 108-287 |
| Cow position: | chr6:34045510-34045688 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 167, 98 |
| Conread position: | 113-638 |
| Cow position: | chr6:3187284-3187839 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 117-255 |
| Cow position: | chr6:65924919-65924782 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 118-251 |
| Cow position: | chr6:4512582-4512716 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 132-255 |
| Cow position: | chr6:15330833-15330952 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 140-264 |
| Cow position: | chr6:55063489-55063609 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 146-332 |
| Cow position: | chr6:29521196-29521379 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 100 |
| Conread position: | 157-455 |
| Cow position: | chr6:53928153-53927842 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 116, 102 |
Show alignments to all cow chromosomes.