Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025P08.5 |
| Conread position: | 64-255 |
| Cow position: | chr9:32582372-32582560 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 73-252 |
| Cow position: | chr9:46459896-46459721 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 5 |
| Conread position: | 94-220 |
| Cow position: | chr9:26482306-26482180 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-248 |
| Cow position: | chr9:57815637-57815792 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 94-249 |
| Cow position: | chr9:5880178-5880333 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-251 |
| Cow position: | chr9:11814317-11814163 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 149, 86 |
| Conread position: | 94-252 |
| Cow position: | chr9:55396039-55395882 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 94-253 |
| Cow position: | chr9:30881335-30881490 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 94-255 |
| Cow position: | chr9:11090757-11090915 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 94-255 |
| Cow position: | chr9:13982801-13982955 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 94-255 |
| Cow position: | chr9:15976177-15976334 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 94-255 |
| Cow position: | chr9:24406594-24406756 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 94-255 |
| Cow position: | chr9:29373267-29373427 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 94-255 |
| Cow position: | chr9:34376149-34375990 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 94-255 |
| Cow position: | chr9:48056970-48057132 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 94-255 |
| Cow position: | chr9:49636263-49636428 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 94-255 |
| Cow position: | chr9:54787909-54788067 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 94-255 |
| Cow position: | chr9:55314382-55314226 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 94-258 |
| Cow position: | chr9:24871123-24870956 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 94-258 |
| Cow position: | chr9:45849256-45849419 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 94-259 |
| Cow position: | chr9:32805081-32805242 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 94-264 |
| Cow position: | chr9:6358023-6357851 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 140, 107 |
| Conread position: | 94-264 |
| Cow position: | chr9:8462025-8461862 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 74 |
| Conread position: | 94-264 |
| Cow position: | chr9:13530757-13530920 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 94-264 |
| Cow position: | chr9:63926168-63926329 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 94-368 |
| Cow position: | chr9:18855503-18855236 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 162, 72 |
| Conread position: | 94-417 |
| Cow position: | chr9:49217469-49217133 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 171, 166 |
| Conread position: | 94-588 |
| Cow position: | chr9:11805468-11804958 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 94-638 |
| Cow position: | chr9:7413839-7414396 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 356 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 165, 278 |
| Conread position: | 94-638 |
| Cow position: | chr9:23367680-23367115 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 130 |
| Conread position: | 96-255 |
| Cow position: | chr9:35747797-35747636 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 96-298 |
| Cow position: | chr9:23851867-23852079 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 115 |
| Conread position: | 96-412 |
| Cow position: | chr9:51592466-51592781 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 97-255 |
| Cow position: | chr9:51760729-51760888 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 98-248 |
| Cow position: | chr9:7125794-7125942 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 98-255 |
| Cow position: | chr9:20637784-20637627 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-255 |
| Cow position: | chr9:44234036-44234207 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 98-348 |
| Cow position: | chr9:17035059-17035301 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 117 |
| Conread position: | 98-351 |
| Cow position: | chr9:44372289-44372034 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 101-648 |
| Cow position: | chr9:50230705-50230139 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 93 |
| Conread position: | 105-255 |
| Cow position: | chr9:20767303-20767153 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-248 |
| Cow position: | chr9:63686838-63686693 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 113-403 |
| Cow position: | chr9:63955225-63954934 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 143, 47 |
| Conread position: | 115-255 |
| Cow position: | chr9:61661818-61661957 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 116-255 |
| Cow position: | chr9:21735344-21735205 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-768 |
| Cow position: | chr9:33157301-33156950 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 444-629 |
| Cow position: | chr9:17798460-17798270 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 166 |
Show alignments to all cow chromosomes.