Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025P08.5 |
| Conread position: | 69-247 |
| Cow position: | chrX:37943220-37943042 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 133 |
| Conread position: | 73-417 |
| Cow position: | chrX:10457231-10457576 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 192, 186 |
| Conread position: | 91-227 |
| Cow position: | chrX:1964263-1964399 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 93-247 |
| Cow position: | chrX:19400379-19400533 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-251 |
| Cow position: | chrX:18152702-18152546 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 94-251 |
| Cow position: | chrX:24737638-24737795 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-251 |
| Cow position: | chrX:30727541-30727390 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 94-252 |
| Cow position: | chrX:1118046-1117880 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 94-252 |
| Cow position: | chrX:8456816-8456975 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 94-253 |
| Cow position: | chrX:31342754-31342899 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 94-254 |
| Cow position: | chrX:42294657-42294817 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chrX:4566373-4566215 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 117, 95 |
| Conread position: | 94-255 |
| Cow position: | chrX:6193776-6193608 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 94-255 |
| Cow position: | chrX:7394119-7393958 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chrX:11509622-11509783 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-255 |
| Cow position: | chrX:12852141-12851980 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 94-255 |
| Cow position: | chrX:15379930-15380096 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 84 |
| Conread position: | 94-255 |
| Cow position: | chrX:21973493-21973654 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 123, 118 |
| Conread position: | 94-255 |
| Cow position: | chrX:23831888-23831735 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 94-255 |
| Cow position: | chrX:34115296-34115140 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 94-255 |
| Cow position: | chrX:36891375-36891544 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 94-255 |
| Cow position: | chrX:41114753-41114915 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 137 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 94-257 |
| Cow position: | chrX:16848982-16848822 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 94-258 |
| Cow position: | chrX:24950987-24950826 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 94-264 |
| Cow position: | chrX:10822065-10821898 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 94-264 |
| Cow position: | chrX:31982072-31981903 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 94-414 |
| Cow position: | chrX:23325782-23325450 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 94-417 |
| Cow position: | chrX:15308447-15308112 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 171, 141 |
| Conread position: | 94-418 |
| Cow position: | chrX:17522663-17522323 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 107, 176 |
| Conread position: | 94-628 |
| Cow position: | chrX:10409531-10408966 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 105 |
| Conread position: | 94-628 |
| Cow position: | chrX:15574330-15573770 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 368 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 181, 59 |
| Conread position: | 94-638 |
| Cow position: | chrX:6026157-6025588 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 368 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 94, 102 |
| Conread position: | 94-643 |
| Cow position: | chrX:27343025-27343586 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 401 |
| Conread position: | 95-232 |
| Cow position: | chrX:5545558-5545424 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 95-629 |
| Cow position: | chrX:14853610-14853050 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 371 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 75, 301 |
| Conread position: | 96-241 |
| Cow position: | chrX:39383524-39383381 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 96-255 |
| Cow position: | chrX:2569664-2569503 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 96-255 |
| Cow position: | chrX:33172411-33172247 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 96-414 |
| Cow position: | chrX:1960775-1961095 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 152, 106 |
| Conread position: | 97-255 |
| Cow position: | chrX:30152037-30151882 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 98-255 |
| Cow position: | chrX:33003811-33003967 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 98-413 |
| Cow position: | chrX:17064626-17064307 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 140, 53 |
| Conread position: | 100-417 |
| Cow position: | chrX:28855058-28855379 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 165, 159 |
| Conread position: | 102-417 |
| Cow position: | chrX:16530485-16530812 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 163, 157 |
| Conread position: | 104-249 |
| Cow position: | chrX:19595831-19595976 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-417 |
| Cow position: | chrX:11412399-11412696 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 144, 138 |
| Conread position: | 128-760 |
| Cow position: | chrX:3805514-3806162 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 115 |
| Conread position: | 132-253 |
| Cow position: | chrX:13864900-13865020 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 143-638 |
| Cow position: | chrX:517781-518301 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 87, 273 |
| Conread position: | 274-407 |
| Cow position: | chrX:42294869-42295004 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 347-638 |
| Cow position: | chrX:11509897-11510192 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 411-629 |
| Cow position: | chrX:23470568-23470343 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 413-629 |
| Cow position: | chrX:15313574-15313795 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 68 |
Show alignments to all cow chromosomes.