Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026N16.3 |
| Conread position: | 425-663 |
| Cow position: | chr1:68371821-68372053 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 432-664 |
| Cow position: | chr1:65775081-65774847 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 433-670 |
| Cow position: | chr1:11606162-11606404 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 433-690 |
| Cow position: | chr1:91819240-91818970 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 111, 69 |
| Conread position: | 441-665 |
| Cow position: | chr1:82904008-82904238 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 443-665 |
| Cow position: | chr1:20957449-20957672 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 168, 10 |
| Conread position: | 445-613 |
| Cow position: | chr1:12585436-12585269 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 87, 54 |
| Conread position: | 445-663 |
| Cow position: | chr1:17086716-17086930 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 158, 29 |
| Conread position: | 445-666 |
| Cow position: | chr1:84278203-84278426 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 56 |
| Conread position: | 452-668 |
| Cow position: | chr1:25859047-25858830 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 145, 36 |
| Conread position: | 453-690 |
| Cow position: | chr1:8220658-8220417 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 49 |
| Conread position: | 455-629 |
| Cow position: | chr1:35706305-35706120 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 455-640 |
| Cow position: | chr1:15527010-15527202 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 456-665 |
| Cow position: | chr1:15192091-15192302 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 85, 49 |
| Conread position: | 480-684 |
| Cow position: | chr1:74535538-74535737 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 481-663 |
| Cow position: | chr1:31323940-31324128 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 481-665 |
| Cow position: | chr1:99069185-99069374 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 481-668 |
| Cow position: | chr1:67999780-67999588 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 481-686 |
| Cow position: | chr1:28879663-28879455 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 482-644 |
| Cow position: | chr1:63050675-63050503 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 483-661 |
| Cow position: | chr1:77186626-77186437 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 483-668 |
| Cow position: | chr1:93813740-93813931 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 483-690 |
| Cow position: | chr1:32663478-32663268 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 490-675 |
| Cow position: | chr1:28821466-28821652 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 490-684 |
| Cow position: | chr1:29256499-29256301 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 113, 17 |
| Conread position: | 490-691 |
| Cow position: | chr1:21015215-21015013 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 491-671 |
| Cow position: | chr1:5238546-5238365 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 14 |
| Conread position: | 494-691 |
| Cow position: | chr1:28041159-28040961 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 500-690 |
| Cow position: | chr1:66211072-66211259 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 502-668 |
| Cow position: | chr1:59766681-59766847 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 503-665 |
| Cow position: | chr1:64632193-64632030 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 503-665 |
| Cow position: | chr1:88636460-88636620 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 63 |
| Conread position: | 503-673 |
| Cow position: | chr1:97645665-97645829 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 508-691 |
| Cow position: | chr1:41289048-41289234 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 508-691 |
| Cow position: | chr1:58600720-58600911 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 510-665 |
| Cow position: | chr1:43114082-43114240 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 512-665 |
| Cow position: | chr1:99217979-99217819 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 539-739 |
| Cow position: | chr1:64498771-64498975 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 566-675 |
| Cow position: | chr1:65155899-65156008 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.