Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026N16.3 |
| Conread position: | 23-306 |
| Cow position: | chr11:34809502-34809211 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 147 |
| Conread position: | 426-603 |
| Cow position: | chr11:64683257-64683081 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 430-657 |
| Cow position: | chr11:37632553-37632318 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 432-665 |
| Cow position: | chr11:60967694-60967464 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 112, 75 |
| Conread position: | 434-663 |
| Cow position: | chr11:49707110-49706881 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 114, 19 |
| Conread position: | 441-665 |
| Cow position: | chr11:3258242-3258033 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 441-665 |
| Cow position: | chr11:35277688-35277911 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 11, 67 |
| Conread position: | 444-671 |
| Cow position: | chr11:70518004-70517764 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 445-665 |
| Cow position: | chr11:33204543-33204773 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 445-665 |
| Cow position: | chr11:75396815-75397032 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 150, 60 |
| Conread position: | 445-666 |
| Cow position: | chr11:38992790-38993011 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 101, 60 |
| Conread position: | 453-664 |
| Cow position: | chr11:6271251-6271038 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 459-644 |
| Cow position: | chr11:3754733-3754920 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 95, 46 |
| Conread position: | 472-670 |
| Cow position: | chr11:81578579-81578782 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 476-668 |
| Cow position: | chr11:60676786-60676979 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 480-663 |
| Cow position: | chr11:30368895-30369077 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 481-665 |
| Cow position: | chr11:20587090-20586902 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 481-665 |
| Cow position: | chr11:72854137-72854327 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 481-684 |
| Cow position: | chr11:29832877-29833083 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 481-686 |
| Cow position: | chr11:1984750-1984552 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 481-690 |
| Cow position: | chr11:20407887-20407674 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 482-664 |
| Cow position: | chr11:41233029-41233218 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 68, 25 |
| Conread position: | 482-668 |
| Cow position: | chr11:41400653-41400455 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 483-691 |
| Cow position: | chr11:209371-209166 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 484-681 |
| Cow position: | chr11:3485924-3486121 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 503-665 |
| Cow position: | chr11:75270210-75270040 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 515-668 |
| Cow position: | chr11:17516946-17517108 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 523-670 |
| Cow position: | chr11:40481190-40481041 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 527-668 |
| Cow position: | chr11:22517403-22517554 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 616-863 |
| Cow position: | chr11:34808109-34807855 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 31 |
Show alignments to all cow chromosomes.