Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026N16.3 |
| Conread position: | 420-665 |
| Cow position: | chr4:4105784-4106029 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 180, 20 |
| Conread position: | 430-665 |
| Cow position: | chr4:14347102-14347335 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 431-665 |
| Cow position: | chr4:62172411-62172181 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 178, 31 |
| Conread position: | 434-665 |
| Cow position: | chr4:33943660-33943884 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 434-668 |
| Cow position: | chr4:36945746-36945518 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 434-690 |
| Cow position: | chr4:54437472-54437210 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 441-665 |
| Cow position: | chr4:50836094-50836328 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 441-665 |
| Cow position: | chr4:65394136-65394357 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 99, 12 |
| Conread position: | 442-686 |
| Cow position: | chr4:51611366-51611119 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 7, 62 |
| Conread position: | 444-665 |
| Cow position: | chr4:10919419-10919646 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 445-668 |
| Cow position: | chr4:51863777-51863999 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 445-669 |
| Cow position: | chr4:24857327-24857109 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 164, 57 |
| Conread position: | 445-680 |
| Cow position: | chr4:53354127-53353882 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 61 |
| Conread position: | 445-686 |
| Cow position: | chr4:36157062-36157299 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 448-663 |
| Cow position: | chr4:23541022-23540803 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 448-668 |
| Cow position: | chr4:13893083-13892867 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 105, 74 |
| Conread position: | 453-664 |
| Cow position: | chr4:14166952-14166737 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 480-668 |
| Cow position: | chr4:35207353-35207155 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 480-675 |
| Cow position: | chr4:10657911-10657718 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 480-675 |
| Cow position: | chr4:47667960-47668140 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 480-680 |
| Cow position: | chr4:48738118-48738317 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 481-629 |
| Cow position: | chr4:8406649-8406800 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 481-644 |
| Cow position: | chr4:1775758-1775597 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 67, 12 |
| Conread position: | 481-668 |
| Cow position: | chr4:502900-502706 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 481-668 |
| Cow position: | chr4:45005604-45005790 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 481-675 |
| Cow position: | chr4:6274375-6274175 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 481-675 |
| Cow position: | chr4:61682190-61681992 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 481-690 |
| Cow position: | chr4:66666403-66666614 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 485-644 |
| Cow position: | chr4:65337626-65337785 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 485-665 |
| Cow position: | chr4:55541244-55541055 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 492-691 |
| Cow position: | chr4:25862465-25862270 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 494-668 |
| Cow position: | chr4:30419349-30419175 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 111, 11 |
| Conread position: | 503-644 |
| Cow position: | chr4:65166483-65166336 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 503-665 |
| Cow position: | chr4:21882400-21882240 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 503-675 |
| Cow position: | chr4:34439809-34439984 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 102, 51 |
| Conread position: | 507-665 |
| Cow position: | chr4:36709932-36709767 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 508-668 |
| Cow position: | chr4:20524542-20524705 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 508-690 |
| Cow position: | chr4:39842363-39842172 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 24, 53 |
| Conread position: | 508-691 |
| Cow position: | chr4:51217549-51217359 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 101, 43 |
| Conread position: | 519-700 |
| Cow position: | chr4:23438525-23438710 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 541-680 |
| Cow position: | chr4:8869958-8870097 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 18 |
Show alignments to all cow chromosomes.