Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026N16.3 |
| Conread position: | 432-596 |
| Cow position: | chr5:26365868-26366034 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 73 |
| Conread position: | 434-607 |
| Cow position: | chr5:26990794-26990630 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 434-668 |
| Cow position: | chr5:75321998-75321769 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 121, 19 |
| Conread position: | 441-665 |
| Cow position: | chr5:35612607-35612376 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 442-582 |
| Cow position: | chr5:42469989-42469850 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 63 |
| Conread position: | 445-641 |
| Cow position: | chr5:3103227-3103030 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 95, 57 |
| Conread position: | 445-665 |
| Cow position: | chr5:12177816-12177588 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 60, 83 |
| Conread position: | 445-665 |
| Cow position: | chr5:36808495-36808281 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 125, 47 |
| Conread position: | 445-665 |
| Cow position: | chr5:65092976-65093203 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 99, 23 |
| Conread position: | 445-669 |
| Cow position: | chr5:66878973-66878739 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 445-690 |
| Cow position: | chr5:76079600-76079359 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 98, 60 |
| Conread position: | 445-721 |
| Cow position: | chr5:28860396-28860671 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 87, 60 |
| Conread position: | 448-663 |
| Cow position: | chr5:373497-373279 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 448-665 |
| Cow position: | chr5:53629685-53629910 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 453-665 |
| Cow position: | chr5:24609436-24609224 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 453-665 |
| Cow position: | chr5:71595345-71595132 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 134, 52 |
| Conread position: | 453-668 |
| Cow position: | chr5:8240166-8240393 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 95, 52 |
| Conread position: | 453-675 |
| Cow position: | chr5:65750436-65750656 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 91, 52 |
| Conread position: | 455-663 |
| Cow position: | chr5:7925719-7925921 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 481-663 |
| Cow position: | chr5:20957245-20957060 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 127, 21 |
| Conread position: | 481-665 |
| Cow position: | chr5:29739529-29739719 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 481-670 |
| Cow position: | chr5:29513462-29513648 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 122, 14 |
| Conread position: | 481-675 |
| Cow position: | chr5:54892054-54892237 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 481-691 |
| Cow position: | chr5:36720600-36720396 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 482-663 |
| Cow position: | chr5:71726001-71726190 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 482-665 |
| Cow position: | chr5:48398649-48398839 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 482-666 |
| Cow position: | chr5:32187021-32187207 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 486-664 |
| Cow position: | chr5:35448591-35448774 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 493-668 |
| Cow position: | chr5:10915137-10915322 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 503-665 |
| Cow position: | chr5:25730293-25730125 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 507-666 |
| Cow position: | chr5:28813758-28813590 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 155 |
| Conread position: | 508-645 |
| Cow position: | chr5:45945889-45946024 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 508-668 |
| Cow position: | chr5:21782951-21782784 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 50 |
Show alignments to all cow chromosomes.