Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8028P01.5 |
| Conread position: | 1-735 |
| Cow position: | chr5:67155036-67155792 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 185 |
| Conread position: | 415-846 |
| Cow position: | chr5:29791919-29792352 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 188 |
| Conread position: | 432-851 |
| Cow position: | chr5:27433769-27434219 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 141 |
| Conread position: | 442-849 |
| Cow position: | chr5:50558588-50559019 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 240 |
| Conread position: | 443-851 |
| Cow position: | chr5:44898770-44898361 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 456-851 |
| Cow position: | chr5:39426834-39427241 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 475-851 |
| Cow position: | chr5:37392232-37391844 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 130 |
| Conread position: | 476-851 |
| Cow position: | chr5:53920535-53920176 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 114 |
| Conread position: | 477-849 |
| Cow position: | chr5:29119772-29120133 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 506-851 |
| Cow position: | chr5:30271970-30272319 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 540-851 |
| Cow position: | chr5:67184632-67184942 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 544-844 |
| Cow position: | chr5:5422046-5421750 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 664-845 |
| Cow position: | chr5:46487825-46487640 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 664-849 |
| Cow position: | chr5:29155721-29155533 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 53 |
| Conread position: | 664-851 |
| Cow position: | chr5:45347883-45347699 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 667-834 |
| Cow position: | chr5:35629016-35628845 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 667-850 |
| Cow position: | chr5:38236243-38236425 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 74 |
| Conread position: | 667-851 |
| Cow position: | chr5:55159106-55159294 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 95, 61 |
| Conread position: | 668-851 |
| Cow position: | chr5:44186771-44186959 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 64, 101 |
| Conread position: | 670-852 |
| Cow position: | chr5:3667094-3667285 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 61 |
| Conread position: | 680-851 |
| Cow position: | chr5:64840321-64840146 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 683-851 |
| Cow position: | chr5:36979716-36979878 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 685-851 |
| Cow position: | chr5:9421926-9421755 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 76, 98 |
| Conread position: | 718-850 |
| Cow position: | chr5:67155969-67156104 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 86, 0 |
Show alignments to all cow chromosomes.