Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029F03.3 |
| Conread position: | 1-136 |
| Cow position: | chr10:6258602-6258732 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-140 |
| Cow position: | chr10:46193032-46192896 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-147 |
| Cow position: | chr10:22583164-22583309 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-154 |
| Cow position: | chr10:29100835-29100990 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-154 |
| Cow position: | chr10:39877537-39877686 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 2-123 |
| Cow position: | chr10:36468288-36468403 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-136 |
| Cow position: | chr10:57503364-57503231 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 2-154 |
| Cow position: | chr10:42642483-42642331 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-121 |
| Cow position: | chr10:10584029-10583911 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-122 |
| Cow position: | chr10:14863850-14863730 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 3-135 |
| Cow position: | chr10:8325224-8325355 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 113 |
| Conread position: | 3-137 |
| Cow position: | chr10:4997436-4997570 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-140 |
| Cow position: | chr10:31045647-31045783 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 113, 63 |
| Conread position: | 3-141 |
| Cow position: | chr10:11822769-11822631 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-146 |
| Cow position: | chr10:18039514-18039373 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 136, 14 |
| Conread position: | 3-149 |
| Cow position: | chr10:38176848-38176702 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 3-152 |
| Cow position: | chr10:7896593-7896741 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-152 |
| Cow position: | chr10:8340847-8340700 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 3-152 |
| Cow position: | chr10:41878812-41878664 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-153 |
| Cow position: | chr10:19494401-19494549 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 3-154 |
| Cow position: | chr10:1379384-1379234 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:6556420-6556271 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:8291928-8291781 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:10172623-10172473 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:14333958-14334108 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:14805731-14805584 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:16927558-16927407 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:19841567-19841417 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:21738867-21739018 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 140 |
| Conread position: | 3-154 |
| Cow position: | chr10:22103118-22102971 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:22249928-22250078 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:22343352-22343202 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:23409362-23409512 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:25651541-25651691 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:28032039-28032190 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 130 |
| Conread position: | 3-154 |
| Cow position: | chr10:28255520-28255670 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:29732626-29732477 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:29844770-29844921 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:30683603-30683753 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:31525616-31525466 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:32702644-32702494 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:33871178-33871023 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 3-154 |
| Cow position: | chr10:34665853-34666002 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:38343478-38343630 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:38842049-38841899 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:39039428-39039578 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:39209637-39209490 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:39440039-39439890 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:39814512-39814661 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:41150847-41150997 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:41159301-41159151 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:41568989-41568839 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:48169315-48169165 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:48375565-48375714 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 3-154 |
| Cow position: | chr10:55095152-55095002 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 3-157 |
| Cow position: | chr10:19705739-19705891 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 118 |
| Conread position: | 3-162 |
| Cow position: | chr10:54127438-54127281 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 27 |
| Conread position: | 4-154 |
| Cow position: | chr10:19142729-19142879 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 112, 129 |
| Conread position: | 4-154 |
| Cow position: | chr10:22644886-22644735 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 4-154 |
| Cow position: | chr10:29630907-29631057 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 130 |
| Conread position: | 4-154 |
| Cow position: | chr10:39778245-39778393 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 49, 44 |
| Conread position: | 4-154 |
| Cow position: | chr10:53320363-53320512 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 31, 130 |
| Conread position: | 4-156 |
| Cow position: | chr10:25339983-25339832 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 5-146 |
| Cow position: | chr10:22574945-22575088 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 7-154 |
| Cow position: | chr10:32828758-32828610 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 8, 128 |
| Conread position: | 9-216 |
| Cow position: | chr10:24295403-24295619 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 115, 74 |
| Conread position: | 25-154 |
| Cow position: | chr10:57555469-57555597 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
Show alignments to all cow chromosomes.