Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029F03.3 |
| Conread position: | 1-154 |
| Cow position: | chr16:41753485-41753635 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 2-190 |
| Cow position: | chr16:20200253-20200065 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 3-122 |
| Cow position: | chr16:23250858-23250974 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-124 |
| Cow position: | chr16:28169196-28169317 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-135 |
| Cow position: | chr16:5891122-5890990 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-136 |
| Cow position: | chr16:54324203-54324335 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-140 |
| Cow position: | chr16:1433310-1433175 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 3-140 |
| Cow position: | chr16:5527261-5527397 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 3-140 |
| Cow position: | chr16:16992170-16992034 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-140 |
| Cow position: | chr16:23984428-23984291 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-140 |
| Cow position: | chr16:41572525-41572388 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 3-140 |
| Cow position: | chr16:51039469-51039333 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-150 |
| Cow position: | chr16:838438-838291 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-152 |
| Cow position: | chr16:43846092-43846239 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-153 |
| Cow position: | chr16:7675332-7675481 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-153 |
| Cow position: | chr16:27594633-27594484 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:33657-33501 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:1566338-1566486 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:2409808-2409958 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:3088078-3088228 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:3331055-3330905 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:3828213-3828366 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 3-154 |
| Cow position: | chr16:5118893-5119043 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:5662965-5662815 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:7465731-7465581 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 138 |
| Conread position: | 3-154 |
| Cow position: | chr16:8814982-8815132 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:10374477-10374626 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:10439382-10439234 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:14664690-14664837 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:15186199-15186055 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:15568382-15568233 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:16240168-16240318 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:19778526-19778676 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:20193046-20193196 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:22800547-22800698 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 128, 140 |
| Conread position: | 3-154 |
| Cow position: | chr16:23534773-23534925 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 3-154 |
| Cow position: | chr16:25086737-25086587 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:25258928-25258778 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:25442755-25442605 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:25456355-25456505 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:26664852-26664701 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 119, 130 |
| Conread position: | 3-154 |
| Cow position: | chr16:27732255-27732406 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 3-154 |
| Cow position: | chr16:28469936-28470086 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:34531413-34531263 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:40295041-40295191 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:42747094-42747244 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:43896138-43896286 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:44899540-44899689 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 3-154 |
| Cow position: | chr16:49220792-49220941 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 3-154 |
| Cow position: | chr16:51085282-51085133 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 3-157 |
| Cow position: | chr16:29048148-29047995 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 4-121 |
| Cow position: | chr16:1959501-1959618 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-152 |
| Cow position: | chr16:16537925-16537779 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 5-154 |
| Cow position: | chr16:4474478-4474630 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 5-154 |
| Cow position: | chr16:25343094-25342947 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 7-185 |
| Cow position: | chr16:20641302-20641128 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 9-152 |
| Cow position: | chr16:4847790-4847930 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 9-154 |
| Cow position: | chr16:2726095-2726239 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 9-154 |
| Cow position: | chr16:12536832-12536976 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 9-158 |
| Cow position: | chr16:5872012-5871865 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.