Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8029F03.3 |
| Conread position: | 1-144 |
| Cow position: | chr18:12238351-12238208 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 2-140 |
| Cow position: | chr18:5078192-5078325 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 2-154 |
| Cow position: | chr18:1046185-1046034 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 3-122 |
| Cow position: | chr18:9722532-9722413 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-123 |
| Cow position: | chr18:27836177-27836297 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-131 |
| Cow position: | chr18:35372852-35372976 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-138 |
| Cow position: | chr18:24714279-24714415 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-139 |
| Cow position: | chr18:23703179-23703314 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 3-140 |
| Cow position: | chr18:42493178-42493316 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-141 |
| Cow position: | chr18:35290559-35290422 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-147 |
| Cow position: | chr18:16464953-16465097 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-152 |
| Cow position: | chr18:37490730-37490584 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 3-152 |
| Cow position: | chr18:54107013-54106866 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 3-153 |
| Cow position: | chr18:25922299-25922150 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:5534914-5534764 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:11272950-11273099 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:14132298-14132148 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:14417877-14417725 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:16174713-16174862 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:23660593-23660743 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:23799552-23799403 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:24618041-24617891 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:27989094-27988944 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:29864703-29864852 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:33270808-33270656 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:36510525-36510375 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:37507871-37507721 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:37583999-37584149 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:41838882-41839031 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:46867009-46867159 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 141, 69 |
| Conread position: | 3-154 |
| Cow position: | chr18:47743399-47743250 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:51343591-51343441 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:51482762-51482612 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:52654720-52654574 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 3-154 |
| Cow position: | chr18:54004270-54004422 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 99, 41 |
| Conread position: | 3-154 |
| Cow position: | chr18:54169615-54169765 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 3-155 |
| Cow position: | chr18:19354275-19354124 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 3-177 |
| Cow position: | chr18:37701584-37701754 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 4-152 |
| Cow position: | chr18:48469273-48469420 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 7, 117 |
| Conread position: | 4-159 |
| Cow position: | chr18:54025716-54025561 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 128 |
| Conread position: | 7-154 |
| Cow position: | chr18:4947852-4947705 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 136 |
| Conread position: | 9-152 |
| Cow position: | chr18:999363-999222 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 9-154 |
| Cow position: | chr18:40482898-40482755 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 11-140 |
| Cow position: | chr18:18495130-18495256 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 13-171 |
| Cow position: | chr18:18853115-18852958 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 27, 47 |
Show alignments to all cow chromosomes.