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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8031F14.3
        

               
Conread position:
               
187-593
               

               
Cow position:
               
chr27:8168713-8168302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
61, 81
               

               
Conread position:
               
189-633
               

               
Cow position:
               
chr27:15669060-15668599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 8
               

               
Conread position:
               
193-326
               

               
Cow position:
               
chr27:21054177-21054308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
200-523
               

               
Cow position:
               
chr27:31151108-31151434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
204-620
               

               
Cow position:
               
chr27:22513948-22513520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
206-631
               

               
Cow position:
               
chr27:7935428-7934998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
206-632
               

               
Cow position:
               
chr27:24228071-24227627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
208-459
               

               
Cow position:
               
chr27:22245375-22245619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
197, 34
               

               
Conread position:
               
208-633
               

               
Cow position:
               
chr27:15453945-15454379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
209-596
               

               
Cow position:
               
chr27:4858885-4858518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
209-630
               

               
Cow position:
               
chr27:20637326-20636916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
13, 90
               

               
Conread position:
               
210-412
               

               
Cow position:
               
chr27:31248874-31248668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 146
               

               
Conread position:
               
210-570
               

               
Cow position:
               
chr27:22386621-22386974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
210-632
               

               
Cow position:
               
chr27:25809777-25809356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
211-405
               

               
Cow position:
               
chr27:31386895-31386695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
211-563
               

               
Cow position:
               
chr27:28896612-28896972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 141
               

               
Conread position:
               
211-631
               

               
Cow position:
               
chr27:16704987-16705412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
28, 137
               

               
Conread position:
               
211-632
               

               
Cow position:
               
chr27:16284227-16284639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
173, 35
               

               
Conread position:
               
212-578
               

               
Cow position:
               
chr27:26226550-26226178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
109, 30
               

               
Conread position:
               
212-588
               

               
Cow position:
               
chr27:16275941-16275552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
107, 17
               

               
Conread position:
               
212-632
               

               
Cow position:
               
chr27:26428393-26427962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 150
               

               
Conread position:
               
213-326
               

               
Cow position:
               
chr27:4487042-4486929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
213-420
               

               
Cow position:
               
chr27:9977424-9977636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
213-627
               

               
Cow position:
               
chr27:29431212-29431622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
213-632
               

               
Cow position:
               
chr27:23632347-23632768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
214-627
               

               
Cow position:
               
chr27:7346409-7346822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
68, 147
               

               
Conread position:
               
214-632
               

               
Cow position:
               
chr27:27020357-27019934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
215-385
               

               
Cow position:
               
chr27:4195297-4195463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
215-397
               

               
Cow position:
               
chr27:23069842-23070022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 128
               

               
Conread position:
               
215-411
               

               
Cow position:
               
chr27:20127555-20127356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
215-420
               

               
Cow position:
               
chr27:11982908-11982693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
104, 144
               

               
Conread position:
               
215-450
               

               
Cow position:
               
chr27:10598729-10598975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
215-451
               

               
Cow position:
               
chr27:26437382-26437135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 133
               

               
Conread position:
               
215-620
               

               
Cow position:
               
chr27:22614598-22614989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
167, 16
               

               
Conread position:
               
215-632
               

               
Cow position:
               
chr27:13251767-13252176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 48
               

               
Conread position:
               
215-632
               

               
Cow position:
               
chr27:19546781-19546336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 143
               

               
Conread position:
               
215-632
               

               
Cow position:
               
chr27:23929717-23930131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
215-632
               

               
Cow position:
               
chr27:26441288-26440890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
281, 13
               

               
Conread position:
               
215-632
               

               
Cow position:
               
chr27:31373232-31372813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
141, 112
               

               
Conread position:
               
215-634
               

               
Cow position:
               
chr27:19669063-19668620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
216-345
               

               
Cow position:
               
chr27:31479015-31479143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
216-412
               

               
Cow position:
               
chr27:18791773-18791567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 142
               

               
Conread position:
               
216-413
               

               
Cow position:
               
chr27:22792578-22792775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
216-414
               

               
Cow position:
               
chr27:11349026-11349223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
97, 50
               

               
Conread position:
               
216-420
               

               
Cow position:
               
chr27:13204206-13204410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 173
               

               
Conread position:
               
216-424
               

               
Cow position:
               
chr27:19452742-19452958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
216-428
               

               
Cow position:
               
chr27:6162665-6162447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
216-597
               

               
Cow position:
               
chr27:5744598-5745000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
216-597
               

               
Cow position:
               
chr27:16103553-16103935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
216-625
               

               
Cow position:
               
chr27:11480897-11480470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
216-629
               

               
Cow position:
               
chr27:22427097-22426665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
216-630
               

               
Cow position:
               
chr27:17397709-17397282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 16
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr27:2592281-2592708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr27:15867132-15867557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 130
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr27:17472555-17472979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr27:22035631-22035207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr27:27003521-27003115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr27:27554936-27554520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
112, 15
               

               
Conread position:
               
217-404
               

               
Cow position:
               
chr27:16246549-16246737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
217-406
               

               
Cow position:
               
chr27:31515810-31515612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
217-582
               

               
Cow position:
               
chr27:19500493-19500118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
217-624
               

               
Cow position:
               
chr27:19496620-19497033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
20, 158
               

               
Conread position:
               
217-624
               

               
Cow position:
               
chr27:30374840-30374412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
77, 153
               

               
Conread position:
               
217-628
               

               
Cow position:
               
chr27:20045640-20046040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
102, 15
               

               
Conread position:
               
217-629
               

               
Cow position:
               
chr27:4944764-4944365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
166, 81
               

               
Conread position:
               
217-629
               

               
Cow position:
               
chr27:22547646-22547241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
187, 103
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr27:4390516-4390088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr27:18543733-18544164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr27:19387764-19388185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 20
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr27:26224513-26224102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
191, 19
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr27:26509414-26508991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 133
               

               
Conread position:
               
218-420
               

               
Cow position:
               
chr27:26794042-26793830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
218-631
               

               
Cow position:
               
chr27:1353323-1353750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr27:12515937-12516365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 64
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr27:18507390-18507798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr27:28922152-28921730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 141
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr27:30407301-30406865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr27:30582481-30582904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
218-645
               

               
Cow position:
               
chr27:15865972-15866403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
218-645
               

               
Cow position:
               
chr27:24446395-24445977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
367, 86
               

               
Conread position:
               
219-326
               

               
Cow position:
               
chr27:6751921-6752029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
219-386
               

               
Cow position:
               
chr27:19074281-19074105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 130
               

               
Conread position:
               
219-450
               

               
Cow position:
               
chr27:26173239-26173482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 143
               

               
Conread position:
               
219-451
               

               
Cow position:
               
chr27:27740549-27740305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
100, 126
               

               
Conread position:
               
219-587
               

               
Cow position:
               
chr27:7615326-7614967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
219-589
               

               
Cow position:
               
chr27:27442420-27442047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
14, 128
               

               
Conread position:
               
219-631
               

               
Cow position:
               
chr27:6550204-6550616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
219-632
               

               
Cow position:
               
chr27:15925090-15925501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
219-632
               

               
Cow position:
               
chr27:21408830-21408386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
219-632
               

               
Cow position:
               
chr27:28932059-28931621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 128
               

               
Conread position:
               
219-632
               

               
Cow position:
               
chr27:30844309-30843912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
187, 13
               

               
Conread position:
               
219-633
               

               
Cow position:
               
chr27:10307558-10307128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
219-633
               

               
Cow position:
               
chr27:28518042-28518453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
97, 12
               

               
Conread position:
               
219-635
               

               
Cow position:
               
chr27:20749255-20748856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
98, 9
               

               
Conread position:
               
219-645
               

               
Cow position:
               
chr27:20354343-20354759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
17, 88
               

               
Conread position:
               
220-325
               

               
Cow position:
               
chr27:26467816-26467711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
220-405
               

               
Cow position:
               
chr27:11208812-11208618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
107, 139
               

               
Conread position:
               
220-405
               

               
Cow position:
               
chr27:19741646-19741472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
220-449
               

               
Cow position:
               
chr27:19508757-19508996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
95, 228
               

               
Conread position:
               
220-625
               

               
Cow position:
               
chr27:13875476-13875894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
18, 133
               

               
Conread position:
               
220-632
               

               
Cow position:
               
chr27:13639246-13638826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
220-632
               

               
Cow position:
               
chr27:21669369-21668958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
12, 232
               

               
Conread position:
               
220-632
               

               
Cow position:
               
chr27:22220293-22220720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 333
               

               
Conread position:
               
220-632
               

               
Cow position:
               
chr27:28002058-28001652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 86
               

               
Conread position:
               
220-632
               

               
Cow position:
               
chr27:30914750-30915168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
221-420
               

               
Cow position:
               
chr27:26400973-26400768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
221-615
               

               
Cow position:
               
chr27:7649844-7649433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
221-645
               

               
Cow position:
               
chr27:1637179-1636762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
185, 11
               

               
Conread position:
               
222-632
               

               
Cow position:
               
chr27:7959082-7958669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
225-624
               

               
Cow position:
               
chr27:16786581-16786985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 101
               

               
Conread position:
               
226-632
               

               
Cow position:
               
chr27:2957166-2957574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
11, 119
               

               
Conread position:
               
226-632
               

               
Cow position:
               
chr27:28206554-28206964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
227-420
               

               
Cow position:
               
chr27:18435378-18435182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 117
               

               
Conread position:
               
227-589
               

               
Cow position:
               
chr27:20101119-20101490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 133
               

               
Conread position:
               
228-420
               

               
Cow position:
               
chr27:18688658-18688456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
228-436
               

               
Cow position:
               
chr27:19932818-19933034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
8, 187
               

               
Conread position:
               
228-534
               

               
Cow position:
               
chr27:26112165-26111841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 131
               

               
Conread position:
               
228-617
               

               
Cow position:
               
chr27:426723-427124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 193
               

               
Conread position:
               
228-620
               

               
Cow position:
               
chr27:2930839-2930442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
8, 130
               

               
Conread position:
               
228-626
               

               
Cow position:
               
chr27:8353248-8353637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
228-628
               

               
Cow position:
               
chr27:30872305-30871897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 68
               

               
Conread position:
               
228-631
               

               
Cow position:
               
chr27:8062599-8062191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 121
               

               
Conread position:
               
228-632
               

               
Cow position:
               
chr27:6541386-6541791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
228-632
               

               
Cow position:
               
chr27:15870911-15871324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 133
               

               
Conread position:
               
228-632
               

               
Cow position:
               
chr27:18031318-18030890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
228-633
               

               
Cow position:
               
chr27:14670627-14670213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
81, 112
               

               
Conread position:
               
229-631
               

               
Cow position:
               
chr27:23452217-23452645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
230-632
               

               
Cow position:
               
chr27:30764787-30765198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 358
               

               
Conread position:
               
231-466
               

               
Cow position:
               
chr27:10323600-10323837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
115, 58
               

               
Conread position:
               
232-397
               

               
Cow position:
               
chr27:11145639-11145807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
232-412
               

               
Cow position:
               
chr27:20048394-20048576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
232-438
               

               
Cow position:
               
chr27:10404360-10404143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
232-624
               

               
Cow position:
               
chr27:6787709-6788117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
232-628
               

               
Cow position:
               
chr27:15315280-15315656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
232-628
               

               
Cow position:
               
chr27:23128222-23128617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 101
               

               
Conread position:
               
232-629
               

               
Cow position:
               
chr27:16478565-16478183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
165, 28
               

               
Conread position:
               
232-630
               

               
Cow position:
               
chr27:22439894-22440304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
232-631
               

               
Cow position:
               
chr27:7412150-7412548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
12, 181
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr27:6499815-6500231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
89, 127
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr27:8962484-8962103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr27:10979617-10980030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
95, 146
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr27:22171059-22171465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
61, 79
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr27:28496613-28496208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr27:29831951-29831520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
69, 135
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr27:30868994-30868572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 237
               

               
Conread position:
               
232-634
               

               
Cow position:
               
chr27:27438751-27438336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
87, 127
               

               
Conread position:
               
232-636
               

               
Cow position:
               
chr27:10582128-10582536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
88, 20
               

               
Conread position:
               
232-643
               

               
Cow position:
               
chr27:19896520-19896932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
232-645
               

               
Cow position:
               
chr27:27389270-27388849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 302
               

               
Conread position:
               
233-405
               

               
Cow position:
               
chr27:19576565-19576387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
233-420
               

               
Cow position:
               
chr27:20484491-20484681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 119
               

               
Conread position:
               
233-434
               

               
Cow position:
               
chr27:3518260-3518472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
84, 128
               

               
Conread position:
               
233-437
               

               
Cow position:
               
chr27:4414057-4413848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
233-631
               

               
Cow position:
               
chr27:28018081-28018502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
52, 250
               

               
Conread position:
               
233-632
               

               
Cow position:
               
chr27:18558116-18558530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 125
               

               
Conread position:
               
233-632
               

               
Cow position:
               
chr27:27245604-27245185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
234-414
               

               
Cow position:
               
chr27:29308102-29308290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 118
               

               
Conread position:
               
234-631
               

               
Cow position:
               
chr27:6453986-6454380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
234-632
               

               
Cow position:
               
chr27:20283403-20283798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
234-632
               

               
Cow position:
               
chr27:24331473-24331892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 128
               

               
Conread position:
               
235-404
               

               
Cow position:
               
chr27:31157570-31157747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 123
               

               
Conread position:
               
235-558
               

               
Cow position:
               
chr27:18646389-18646053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 117
               

               
Conread position:
               
235-632
               

               
Cow position:
               
chr27:299614-299217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
69, 55
               

               
Conread position:
               
236-418
               

               
Cow position:
               
chr27:17102661-17102845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
85, 63
               

               
Conread position:
               
236-504
               

               
Cow position:
               
chr27:11561536-11561811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 21
               

               
Conread position:
               
236-623
               

               
Cow position:
               
chr27:14343674-14343310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
142, 39
               

               
Conread position:
               
236-626
               

               
Cow position:
               
chr27:3306547-3306936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
162, 70
               

               
Conread position:
               
236-631
               

               
Cow position:
               
chr27:12596543-12596924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
76, 106
               

               
Conread position:
               
236-632
               

               
Cow position:
               
chr27:28190430-28190051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
236-632
               

               
Cow position:
               
chr27:29494137-29493750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
66, 53
               

               
Conread position:
               
237-632
               

               
Cow position:
               
chr27:27050124-27049746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
162, 29
               

               
Conread position:
               
240-632
               

               
Cow position:
               
chr27:23554564-23554153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 111
               

               
Conread position:
               
242-421
               

               
Cow position:
               
chr27:1184406-1184223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
242-428
               

               
Cow position:
               
chr27:19557160-19557348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
242-630
               

               
Cow position:
               
chr27:8630106-8629707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
242-632
               

               
Cow position:
               
chr27:15409258-15408877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
166, 57
               

               
Conread position:
               
243-632
               

               
Cow position:
               
chr27:22330890-22330503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 78
               

               
Conread position:
               
243-645
               

               
Cow position:
               
chr27:10992142-10992533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 43
               

               
Conread position:
               
244-528
               

               
Cow position:
               
chr27:17646386-17646111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
164, 14
               

               
Conread position:
               
244-631
               

               
Cow position:
               
chr27:19589247-19589641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
6, 47
               

               
Conread position:
               
246-401
               

               
Cow position:
               
chr27:23177541-23177380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 101
               

               
Conread position:
               
246-405
               

               
Cow position:
               
chr27:26909817-26909655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 106
               

               
Conread position:
               
246-559
               

               
Cow position:
               
chr27:26188598-26188915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
246-632
               

               
Cow position:
               
chr27:13318206-13317788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 113
               

               
Conread position:
               
246-632
               

               
Cow position:
               
chr27:18739145-18739554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
246-632
               

               
Cow position:
               
chr27:19685939-19685548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
246-632
               

               
Cow position:
               
chr27:26424805-26424419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
61, 102
               

               
Conread position:
               
247-645
               

               
Cow position:
               
chr27:19660700-19661121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
248-425
               

               
Cow position:
               
chr27:24755764-24755947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 94
               

               
Conread position:
               
248-621
               

               
Cow position:
               
chr27:23890706-23891093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
77, 214
               

               
Conread position:
               
249-518
               

               
Cow position:
               
chr27:23859937-23860221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
249-628
               

               
Cow position:
               
chr27:26238798-26239187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
70, 215
               

               
Conread position:
               
249-632
               

               
Cow position:
               
chr27:21393719-21393338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
159, 49
               

               
Conread position:
               
249-633
               

               
Cow position:
               
chr27:1768843-1768468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
254-630
               

               
Cow position:
               
chr27:20037320-20036964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 46
               

               
Conread position:
               
254-632
               

               
Cow position:
               
chr27:20068196-20067812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
257-632
               

               
Cow position:
               
chr27:11815966-11815593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
271-619
               

               
Cow position:
               
chr27:7731457-7731095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
277-628
               

               
Cow position:
               
chr27:22418962-22418602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
278-638
               

               
Cow position:
               
chr27:26807756-26807392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
291-628
               

               
Cow position:
               
chr27:20553554-20553879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
298-632
               

               
Cow position:
               
chr27:4672842-4673187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
298-632
               

               
Cow position:
               
chr27:30354516-30354177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
22, 110
               

               
Conread position:
               
299-621
               

               
Cow position:
               
chr27:30359238-30359554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr27:20795622-20795950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
299-645
               

               
Cow position:
               
chr27:22723863-22723527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
300-630
               

               
Cow position:
               
chr27:1291022-1290700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
300-631
               

               
Cow position:
               
chr27:26150849-26151185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
108, 154
               

               
Conread position:
               
300-632
               

               
Cow position:
               
chr27:25276970-25277303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
303-632
               

               
Cow position:
               
chr27:23483062-23483389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
309-632
               

               
Cow position:
               
chr27:18593113-18593437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
314-626
               

               
Cow position:
               
chr27:27270696-27270377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 35
               

               
Conread position:
               
314-632
               

               
Cow position:
               
chr27:23882522-23882208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
317-539
               

               
Cow position:
               
chr27:15215078-15215306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
319-611
               

               
Cow position:
               
chr27:1122882-1123180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 146
               

               
Conread position:
               
319-632
               

               
Cow position:
               
chr27:8942839-8942517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
319-633
               

               
Cow position:
               
chr27:24321040-24321357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
13, 17
               

               
Conread position:
               
320-632
               

               
Cow position:
               
chr27:19717766-19718090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 162
               

               
Conread position:
               
320-632
               

               
Cow position:
               
chr27:20641482-20641180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
320-632
               

               
Cow position:
               
chr27:27038986-27038677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
223, 272
               

               
Conread position:
               
320-632
               

               
Cow position:
               
chr27:27064588-27064273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 130
               

               
Conread position:
               
320-632
               

               
Cow position:
               
chr27:27641159-27640825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
321-568
               

               
Cow position:
               
chr27:8263484-8263232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
322-630
               

               
Cow position:
               
chr27:22454921-22454617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
322-632
               

               
Cow position:
               
chr27:21453240-21452903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr27:4386206-4385900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr27:12246509-12246825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr27:15643030-15643342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr27:26413399-26413089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
323-633
               

               
Cow position:
               
chr27:30988653-30988965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
324-614
               

               
Cow position:
               
chr27:715357-715652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
324-632
               

               
Cow position:
               
chr27:24014884-24014574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 147
               

               
Conread position:
               
326-618
               

               
Cow position:
               
chr27:28271292-28270994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
334-632
               

               
Cow position:
               
chr27:23472124-23472422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
334-632
               

               
Cow position:
               
chr27:29515979-29515694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
162, 16
               

               
Conread position:
               
340-632
               

               
Cow position:
               
chr27:19648071-19647775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
351-580
               

               
Cow position:
               
chr27:30672676-30672449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
145, 56
               

               
Conread position:
               
351-632
               

               
Cow position:
               
chr27:706835-707114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
356-631
               

               
Cow position:
               
chr27:27844115-27843827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
356-632
               

               
Cow position:
               
chr27:4812996-4812710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 51
               

               
Conread position:
               
356-632
               

               
Cow position:
               
chr27:25379875-25380157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
358-632
               

               
Cow position:
               
chr27:11081090-11081363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
359-629
               

               
Cow position:
               
chr27:21351131-21350852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 28
               

               
Conread position:
               
361-632
               

               
Cow position:
               
chr27:9090898-9090635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
137, 38
               

               
Conread position:
               
361-632
               

               
Cow position:
               
chr27:12278360-12278106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
361-632
               

               
Cow position:
               
chr27:12429299-12429575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
182, 46
               

               
Conread position:
               
361-632
               

               
Cow position:
               
chr27:30362146-30362409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
212, 33
               

               
Conread position:
               
362-628
               

               
Cow position:
               
chr27:9169748-9169482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
362-632
               

               
Cow position:
               
chr27:815254-815531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
5, 47
               

               
Conread position:
               
364-632
               

               
Cow position:
               
chr27:24999845-24999568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
366-632
               

               
Cow position:
               
chr27:1058780-1058513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
177, 89
               

               
Conread position:
               
387-631
               

               
Cow position:
               
chr27:23070437-23070194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
118, 61
               

               
Conread position:
               
402-629
               

               
Cow position:
               
chr27:29283473-29283245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
402-632
               

               
Cow position:
               
chr27:14902716-14902482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
69, 48
               

               
Conread position:
               
402-632
               

               
Cow position:
               
chr27:21569903-21569677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
405-632
               

               
Cow position:
               
chr27:26398319-26398092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
409-645
               

               
Cow position:
               
chr27:6058442-6058682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
5, 24
               

               
Conread position:
               
411-632
               

               
Cow position:
               
chr27:22268447-22268671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
411-632
               

               
Cow position:
               
chr27:27040548-27040774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
411-632
               

               
Cow position:
               
chr27:30670686-30670904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
134, 63
               

               
Conread position:
               
431-632
               

               
Cow position:
               
chr27:31499028-31499234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
446-631
               

               
Cow position:
               
chr27:11255500-11255678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
455-632
               

               
Cow position:
               
chr27:25790790-25790970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
458-632
               

               
Cow position:
               
chr27:28038351-28038171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
458-633
               

               
Cow position:
               
chr27:18434480-18434303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
463-631
               

               
Cow position:
               
chr27:30177581-30177409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
463-632
               

               
Cow position:
               
chr27:18215047-18215222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
470-631
               

               
Cow position:
               
chr27:6523040-6523211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 101
               

               
Conread position:
               
470-633
               

               
Cow position:
               
chr27:27550740-27550580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
477-629
               

               
Cow position:
               
chr27:22498566-22498716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 107
               

               
Conread position:
               
477-632
               

               
Cow position:
               
chr27:20591990-20592150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
478-633
               

               
Cow position:
               
chr27:31147661-31147506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
481-632
               

               
Cow position:
               
chr27:21419056-21418900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
481-633
               

               
Cow position:
               
chr27:29250891-29251047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
490-624
               

               
Cow position:
               
chr27:15859065-15858932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
494-631
               

               
Cow position:
               
chr27:26959590-26959455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
495-620
               

               
Cow position:
               
chr27:13376000-13375877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
495-628
               

               
Cow position:
               
chr27:19577703-19577837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
495-631
               

               
Cow position:
               
chr27:2012075-2011937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
495-631
               

               
Cow position:
               
chr27:27259637-27259774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr27:1498346-1498480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr27:16620017-16620158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr27:22179765-22179631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr27:22771780-22771924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr27:25411490-25411353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr27:28164377-28164245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr27:30551026-30551162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr27:30560943-30561079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
495-633
               

               
Cow position:
               
chr27:30989816-30989676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
495-636
               

               
Cow position:
               
chr27:28009032-28008888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
495-645
               

               
Cow position:
               
chr27:6073949-6074096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 93
               

               
Conread position:
               
497-630
               

               
Cow position:
               
chr27:6674266-6674405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
497-646
               

               
Cow position:
               
chr27:16871882-16871735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
502-632
               

               
Cow position:
               
chr27:1884073-1884203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
503-632
               

               
Cow position:
               
chr27:13847678-13847805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
504-632
               

               
Cow position:
               
chr27:26322388-26322520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
505-632
               

               
Cow position:
               
chr27:27141633-27141760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
506-632
               

               
Cow position:
               
chr27:26625165-26625291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
509-632
               

               
Cow position:
               
chr27:18922493-18922617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
511-632
               

               
Cow position:
               
chr27:27528316-27528195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
514-631
               

               
Cow position:
               
chr27:17926584-17926471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
524-629
               

               
Cow position:
               
chr27:26406984-26406877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 16
               
Show alignments to all cow chromosomes.