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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8031F14.3
        

               
Conread position:
               
193-632
               

               
Cow position:
               
chr3:49118817-49119264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
195-629
               

               
Cow position:
               
chr3:68303530-68303098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
124, 165
               

               
Conread position:
               
198-488
               

               
Cow position:
               
chr3:48459123-48459419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
114, 8
               

               
Conread position:
               
199-403
               

               
Cow position:
               
chr3:2016641-2016433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 146
               

               
Conread position:
               
199-629
               

               
Cow position:
               
chr3:53790334-53790771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
115, 76
               

               
Conread position:
               
199-632
               

               
Cow position:
               
chr3:53592472-53592934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 168
               

               
Conread position:
               
200-583
               

               
Cow position:
               
chr3:45667137-45667536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
200-632
               

               
Cow position:
               
chr3:17134539-17134106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 143
               

               
Conread position:
               
201-556
               

               
Cow position:
               
chr3:24468181-24468536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
202-405
               

               
Cow position:
               
chr3:23131966-23132173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
112, 29
               

               
Conread position:
               
202-489
               

               
Cow position:
               
chr3:23203023-23203324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
204-553
               

               
Cow position:
               
chr3:23920220-23920584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
15, 158
               

               
Conread position:
               
205-419
               

               
Cow position:
               
chr3:44960150-44959924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 157
               

               
Conread position:
               
205-632
               

               
Cow position:
               
chr3:16334005-16333573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
205-632
               

               
Cow position:
               
chr3:37187012-37186600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 132
               

               
Conread position:
               
206-542
               

               
Cow position:
               
chr3:22221526-22221177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
115, 21
               

               
Conread position:
               
206-632
               

               
Cow position:
               
chr3:15752434-15752861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
208-405
               

               
Cow position:
               
chr3:55730271-55730473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
208-425
               

               
Cow position:
               
chr3:16710596-16710823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 154
               

               
Conread position:
               
208-428
               

               
Cow position:
               
chr3:28902566-28902790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
208-632
               

               
Cow position:
               
chr3:13899258-13899686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
196, 20
               

               
Conread position:
               
208-632
               

               
Cow position:
               
chr3:42178349-42177925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
209-405
               

               
Cow position:
               
chr3:15859187-15859383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
209-631
               

               
Cow position:
               
chr3:30180282-30179851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 136
               

               
Conread position:
               
210-602
               

               
Cow position:
               
chr3:67519980-67520379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 22
               

               
Conread position:
               
211-389
               

               
Cow position:
               
chr3:51153241-51153057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
211-416
               

               
Cow position:
               
chr3:4071572-4071784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 192
               

               
Conread position:
               
211-578
               

               
Cow position:
               
chr3:76922475-76922842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 101
               

               
Conread position:
               
211-632
               

               
Cow position:
               
chr3:20674683-20675112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
212-412
               

               
Cow position:
               
chr3:76168433-76168642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
8, 148
               

               
Conread position:
               
212-425
               

               
Cow position:
               
chr3:35075066-35074855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
212-632
               

               
Cow position:
               
chr3:8061317-8060899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
212-632
               

               
Cow position:
               
chr3:18393204-18393617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
213-419
               

               
Cow position:
               
chr3:46792579-46792367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
213-420
               

               
Cow position:
               
chr3:18479102-18479317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 145
               

               
Conread position:
               
213-519
               

               
Cow position:
               
chr3:58527566-58527277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
213-616
               

               
Cow position:
               
chr3:46005824-46006248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
213-618
               

               
Cow position:
               
chr3:48253076-48252671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
213-621
               

               
Cow position:
               
chr3:14465524-14465930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
213-632
               

               
Cow position:
               
chr3:15051759-15052178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
213-632
               

               
Cow position:
               
chr3:83491275-83490843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 130
               

               
Conread position:
               
214-431
               

               
Cow position:
               
chr3:28896828-28897053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 135
               

               
Conread position:
               
214-456
               

               
Cow position:
               
chr3:6182040-6182279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
214-588
               

               
Cow position:
               
chr3:14599111-14598761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
153, 13
               

               
Conread position:
               
214-618
               

               
Cow position:
               
chr3:59649447-59649039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
214-627
               

               
Cow position:
               
chr3:55970710-55970276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 152
               

               
Conread position:
               
214-632
               

               
Cow position:
               
chr3:14553062-14552645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 17
               

               
Conread position:
               
214-632
               

               
Cow position:
               
chr3:17456074-17456502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 144
               

               
Conread position:
               
214-632
               

               
Cow position:
               
chr3:51578133-51578554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 17
               

               
Conread position:
               
214-633
               

               
Cow position:
               
chr3:57577886-57577460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
214-645
               

               
Cow position:
               
chr3:9641749-9641318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
215-412
               

               
Cow position:
               
chr3:32127227-32127415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
215-414
               

               
Cow position:
               
chr3:75966589-75966796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 189
               

               
Conread position:
               
215-436
               

               
Cow position:
               
chr3:3275787-3275557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 127
               

               
Conread position:
               
215-506
               

               
Cow position:
               
chr3:18059898-18059594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 144
               

               
Conread position:
               
215-533
               

               
Cow position:
               
chr3:55177559-55177885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
215-622
               

               
Cow position:
               
chr3:70676423-70675997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 130
               

               
Conread position:
               
215-632
               

               
Cow position:
               
chr3:6853324-6853734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
105, 14
               

               
Conread position:
               
215-632
               

               
Cow position:
               
chr3:13301654-13302089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
215-632
               

               
Cow position:
               
chr3:25690996-25690552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
14, 276
               

               
Conread position:
               
215-632
               

               
Cow position:
               
chr3:26066178-26065768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
215-633
               

               
Cow position:
               
chr3:15159221-15158807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
216-389
               

               
Cow position:
               
chr3:68624411-68624229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 134
               

               
Conread position:
               
216-393
               

               
Cow position:
               
chr3:44594811-44594629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
216-402
               

               
Cow position:
               
chr3:6049095-6049290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
59, 143
               

               
Conread position:
               
216-404
               

               
Cow position:
               
chr3:83934914-83934722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 12
               

               
Conread position:
               
216-405
               

               
Cow position:
               
chr3:79893304-79893502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 142
               

               
Conread position:
               
216-406
               

               
Cow position:
               
chr3:78258559-78258760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
82, 146
               

               
Conread position:
               
216-412
               

               
Cow position:
               
chr3:51150322-51150118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
216-412
               

               
Cow position:
               
chr3:78071601-78071801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 138
               

               
Conread position:
               
216-416
               

               
Cow position:
               
chr3:18699915-18700128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 136
               

               
Conread position:
               
216-420
               

               
Cow position:
               
chr3:4120182-4120385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
216-420
               

               
Cow position:
               
chr3:58101866-58101658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 127
               

               
Conread position:
               
216-420
               

               
Cow position:
               
chr3:70402829-70402625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
96, 126
               

               
Conread position:
               
216-421
               

               
Cow position:
               
chr3:43388934-43389150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
101, 143
               

               
Conread position:
               
216-437
               

               
Cow position:
               
chr3:58452238-58452008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
216-457
               

               
Cow position:
               
chr3:42796328-42796578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 14
               

               
Conread position:
               
216-505
               

               
Cow position:
               
chr3:51608991-51609288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 144
               

               
Conread position:
               
216-514
               

               
Cow position:
               
chr3:22165227-22165533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chr3:60264531-60264857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
216-585
               

               
Cow position:
               
chr3:75687246-75687625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
216-590
               

               
Cow position:
               
chr3:68587212-68586831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
20, 130
               

               
Conread position:
               
216-593
               

               
Cow position:
               
chr3:53875572-53875953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
103, 16
               

               
Conread position:
               
216-604
               

               
Cow position:
               
chr3:55712624-55712220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
216-611
               

               
Cow position:
               
chr3:55318705-55319110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 132
               

               
Conread position:
               
216-613
               

               
Cow position:
               
chr3:20841687-20842074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
216-617
               

               
Cow position:
               
chr3:67698472-67698061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 211
               

               
Conread position:
               
216-619
               

               
Cow position:
               
chr3:45211496-45211075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 144
               

               
Conread position:
               
216-624
               

               
Cow position:
               
chr3:80973542-80973128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
123, 112
               

               
Conread position:
               
216-625
               

               
Cow position:
               
chr3:38864310-38863891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 101
               

               
Conread position:
               
216-627
               

               
Cow position:
               
chr3:68145664-68146064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 53
               

               
Conread position:
               
216-628
               

               
Cow position:
               
chr3:53271023-53270597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
216-629
               

               
Cow position:
               
chr3:59333950-59333537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 60
               

               
Conread position:
               
216-631
               

               
Cow position:
               
chr3:23168877-23169302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
90, 47
               

               
Conread position:
               
216-631
               

               
Cow position:
               
chr3:27274717-27274301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 16
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:2025395-2024951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 146
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:18067318-18066901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 12
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:31297962-31298393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 204
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:50768871-50768445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
21, 199
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:59391931-59392343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
15, 131
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:59605032-59604637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
96, 16
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:65058891-65058468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 133
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:68648366-68647927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 13
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:74234372-74233962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
77, 41
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:77188630-77188209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
111, 20
               

               
Conread position:
               
216-632
               

               
Cow position:
               
chr3:79902691-79902270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
15, 212
               

               
Conread position:
               
216-633
               

               
Cow position:
               
chr3:53910294-53909879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
98, 12
               

               
Conread position:
               
216-645
               

               
Cow position:
               
chr3:9662978-9663433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 135
               

               
Conread position:
               
216-645
               

               
Cow position:
               
chr3:29887249-29887670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
216-645
               

               
Cow position:
               
chr3:53739006-53739436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
216-645
               

               
Cow position:
               
chr3:54946310-54945878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
217-325
               

               
Cow position:
               
chr3:42933675-42933565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
217-404
               

               
Cow position:
               
chr3:16362325-16362508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
217-404
               

               
Cow position:
               
chr3:24220389-24220581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
217-405
               

               
Cow position:
               
chr3:31115088-31115274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
217-420
               

               
Cow position:
               
chr3:53604557-53604765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
217-420
               

               
Cow position:
               
chr3:56948908-56949107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
217-420
               

               
Cow position:
               
chr3:76056098-76056306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 127
               

               
Conread position:
               
217-420
               

               
Cow position:
               
chr3:82195674-82195465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
217-429
               

               
Cow position:
               
chr3:83889441-83889220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 135
               

               
Conread position:
               
217-431
               

               
Cow position:
               
chr3:72027829-72027603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
102, 142
               

               
Conread position:
               
217-438
               

               
Cow position:
               
chr3:12090868-12090632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 146
               

               
Conread position:
               
217-443
               

               
Cow position:
               
chr3:15973760-15973528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 143
               

               
Conread position:
               
217-449
               

               
Cow position:
               
chr3:40212844-40213085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
217-575
               

               
Cow position:
               
chr3:19793084-19792716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
217-578
               

               
Cow position:
               
chr3:70761934-70762302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
217-582
               

               
Cow position:
               
chr3:75853149-75853514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
217-621
               

               
Cow position:
               
chr3:2199054-2198660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
205, 82
               

               
Conread position:
               
217-630
               

               
Cow position:
               
chr3:76172492-76172893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
186, 104
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr3:1830383-1830796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 132
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr3:15228654-15229052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
190, 14
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr3:16547864-16547443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr3:18687092-18686683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 126
               

               
Conread position:
               
217-632
               

               
Cow position:
               
chr3:31309167-31309588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
218-326
               

               
Cow position:
               
chr3:59926823-59926714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
218-405
               

               
Cow position:
               
chr3:70333037-70333225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 125
               

               
Conread position:
               
218-407
               

               
Cow position:
               
chr3:10842005-10841807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
98, 143
               

               
Conread position:
               
218-420
               

               
Cow position:
               
chr3:75777877-75778083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 90
               

               
Conread position:
               
218-441
               

               
Cow position:
               
chr3:10591326-10591545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
165, 19
               

               
Conread position:
               
218-539
               

               
Cow position:
               
chr3:1517321-1517654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
218-611
               

               
Cow position:
               
chr3:36375346-36375760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
14, 135
               

               
Conread position:
               
218-623
               

               
Cow position:
               
chr3:74754504-74754105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
184, 81
               

               
Conread position:
               
218-627
               

               
Cow position:
               
chr3:2518351-2518765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
20, 141
               

               
Conread position:
               
218-627
               

               
Cow position:
               
chr3:43233688-43233275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
218-631
               

               
Cow position:
               
chr3:29813415-29813011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 75
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr3:7330950-7331350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr3:20802454-20802863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 10
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr3:22232479-22232876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
271, 46
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr3:57764400-57763990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 17
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr3:67744451-67744861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
218-632
               

               
Cow position:
               
chr3:71496941-71497378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
219-405
               

               
Cow position:
               
chr3:11281956-11281762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
219-405
               

               
Cow position:
               
chr3:64800359-64800554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
107, 140
               

               
Conread position:
               
219-415
               

               
Cow position:
               
chr3:27286704-27286502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 136
               

               
Conread position:
               
219-420
               

               
Cow position:
               
chr3:15160703-15160501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 13
               

               
Conread position:
               
219-426
               

               
Cow position:
               
chr3:34392039-34392245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
219-451
               

               
Cow position:
               
chr3:4268386-4268628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
107, 140
               

               
Conread position:
               
219-487
               

               
Cow position:
               
chr3:39873521-39873784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
181, 13
               

               
Conread position:
               
219-551
               

               
Cow position:
               
chr3:81039558-81039898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
219-574
               

               
Cow position:
               
chr3:55819937-55819572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
219-608
               

               
Cow position:
               
chr3:54373672-54374070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
219-624
               

               
Cow position:
               
chr3:14725505-14725072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
18, 142
               

               
Conread position:
               
219-624
               

               
Cow position:
               
chr3:39066516-39066108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
107, 18
               

               
Conread position:
               
219-627
               

               
Cow position:
               
chr3:23734900-23735331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
18, 138
               

               
Conread position:
               
219-630
               

               
Cow position:
               
chr3:83474942-83474516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 256
               

               
Conread position:
               
219-631
               

               
Cow position:
               
chr3:4456911-4457308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
190, 9
               

               
Conread position:
               
219-632
               

               
Cow position:
               
chr3:2675217-2674796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
219-632
               

               
Cow position:
               
chr3:18459349-18459753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 44
               

               
Conread position:
               
219-632
               

               
Cow position:
               
chr3:23877183-23876765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
219-645
               

               
Cow position:
               
chr3:14601523-14601960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
219-645
               

               
Cow position:
               
chr3:17694813-17695251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
219-645
               

               
Cow position:
               
chr3:76138648-76138243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
220-326
               

               
Cow position:
               
chr3:51543627-51543518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
220-420
               

               
Cow position:
               
chr3:62789762-62789973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 142
               

               
Conread position:
               
220-423
               

               
Cow position:
               
chr3:61023834-61024047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
220-598
               

               
Cow position:
               
chr3:71478779-71478391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 46
               

               
Conread position:
               
220-605
               

               
Cow position:
               
chr3:83699681-83700080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 137
               

               
Conread position:
               
220-624
               

               
Cow position:
               
chr3:7763845-7763439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
98, 140
               

               
Conread position:
               
220-629
               

               
Cow position:
               
chr3:189059-188629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
220-629
               

               
Cow position:
               
chr3:210511-210093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
220-632
               

               
Cow position:
               
chr3:17957651-17957233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
220-632
               

               
Cow position:
               
chr3:50614808-50614406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
188, 11
               

               
Conread position:
               
220-632
               

               
Cow position:
               
chr3:53222199-53221781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 197
               

               
Conread position:
               
220-632
               

               
Cow position:
               
chr3:53384096-53384516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
90, 8
               

               
Conread position:
               
221-326
               

               
Cow position:
               
chr3:45183636-45183740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
221-326
               

               
Cow position:
               
chr3:61680502-61680398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
221-420
               

               
Cow position:
               
chr3:18831606-18831402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
221-557
               

               
Cow position:
               
chr3:15153875-15153534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
221-630
               

               
Cow position:
               
chr3:79591709-79592120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
221-631
               

               
Cow position:
               
chr3:33252706-33253113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 132
               

               
Conread position:
               
221-632
               

               
Cow position:
               
chr3:2396610-2397016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
129, 11
               

               
Conread position:
               
221-632
               

               
Cow position:
               
chr3:28908030-28908428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
182, 70
               

               
Conread position:
               
221-632
               

               
Cow position:
               
chr3:37041601-37041194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
223-631
               

               
Cow position:
               
chr3:5365849-5365454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
183, 77
               

               
Conread position:
               
224-607
               

               
Cow position:
               
chr3:76267789-76268189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
5, 126
               

               
Conread position:
               
224-627
               

               
Cow position:
               
chr3:56583031-56582615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 127
               

               
Conread position:
               
224-632
               

               
Cow position:
               
chr3:2506293-2506714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 126
               

               
Conread position:
               
224-633
               

               
Cow position:
               
chr3:18185264-18184834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 140
               

               
Conread position:
               
225-620
               

               
Cow position:
               
chr3:11063543-11063157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
226-475
               

               
Cow position:
               
chr3:30357691-30357444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 77
               

               
Conread position:
               
226-632
               

               
Cow position:
               
chr3:49328115-49327704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
227-393
               

               
Cow position:
               
chr3:31804590-31804751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
227-420
               

               
Cow position:
               
chr3:31793701-31793903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 133
               

               
Conread position:
               
227-614
               

               
Cow position:
               
chr3:76713132-76713537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
73, 195
               

               
Conread position:
               
228-420
               

               
Cow position:
               
chr3:59681728-59681923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
228-426
               

               
Cow position:
               
chr3:73513883-73514074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 61
               

               
Conread position:
               
228-586
               

               
Cow position:
               
chr3:19199167-19198800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
8, 46
               

               
Conread position:
               
228-626
               

               
Cow position:
               
chr3:67929079-67929495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 124
               

               
Conread position:
               
228-627
               

               
Cow position:
               
chr3:75050444-75050846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
228-630
               

               
Cow position:
               
chr3:60933597-60933184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
98, 133
               

               
Conread position:
               
228-630
               

               
Cow position:
               
chr3:75480177-75479781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
228-632
               

               
Cow position:
               
chr3:39661274-39661683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
8, 134
               

               
Conread position:
               
228-632
               

               
Cow position:
               
chr3:49482534-49482942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
228-632
               

               
Cow position:
               
chr3:57754296-57754717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
86, 131
               

               
Conread position:
               
228-632
               

               
Cow position:
               
chr3:71231577-71231173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 122
               

               
Conread position:
               
228-645
               

               
Cow position:
               
chr3:4461311-4461735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
228-645
               

               
Cow position:
               
chr3:29596575-29596148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
228-645
               

               
Cow position:
               
chr3:83454978-83455398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
231-632
               

               
Cow position:
               
chr3:44932688-44932275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 120
               

               
Conread position:
               
232-325
               

               
Cow position:
               
chr3:33460424-33460517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-326
               

               
Cow position:
               
chr3:10454019-10453925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-387
               

               
Cow position:
               
chr3:49787731-49787572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
75, 122
               

               
Conread position:
               
232-404
               

               
Cow position:
               
chr3:635353-635174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
232-405
               

               
Cow position:
               
chr3:61224574-61224748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
98, 87
               

               
Conread position:
               
232-416
               

               
Cow position:
               
chr3:27246792-27246976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
80, 67
               

               
Conread position:
               
232-418
               

               
Cow position:
               
chr3:79272401-79272590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 121
               

               
Conread position:
               
232-422
               

               
Cow position:
               
chr3:23037333-23037530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 50
               

               
Conread position:
               
232-434
               

               
Cow position:
               
chr3:23640514-23640309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
75, 186
               

               
Conread position:
               
232-438
               

               
Cow position:
               
chr3:54905781-54905577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
182, 80
               

               
Conread position:
               
232-438
               

               
Cow position:
               
chr3:82366304-82366088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
73, 116
               

               
Conread position:
               
232-468
               

               
Cow position:
               
chr3:3698819-3698586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
171, 74
               

               
Conread position:
               
232-528
               

               
Cow position:
               
chr3:35055801-35056108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 122
               

               
Conread position:
               
232-539
               

               
Cow position:
               
chr3:15443551-15443870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
87, 127
               

               
Conread position:
               
232-539
               

               
Cow position:
               
chr3:48900155-48900478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 118
               

               
Conread position:
               
232-551
               

               
Cow position:
               
chr3:2648333-2648666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
87, 115
               

               
Conread position:
               
232-551
               

               
Cow position:
               
chr3:29946561-29946242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
232-551
               

               
Cow position:
               
chr3:70333794-70334117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
111, 177
               

               
Conread position:
               
232-561
               

               
Cow position:
               
chr3:58764911-58765239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
171, 67
               

               
Conread position:
               
232-593
               

               
Cow position:
               
chr3:38828926-38828572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
232-605
               

               
Cow position:
               
chr3:29359989-29360336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
232-614
               

               
Cow position:
               
chr3:70609800-70609407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
232-622
               

               
Cow position:
               
chr3:20663367-20663761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 133
               

               
Conread position:
               
232-629
               

               
Cow position:
               
chr3:20130112-20129712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 128
               

               
Conread position:
               
232-630
               

               
Cow position:
               
chr3:3985492-3985099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 81
               

               
Conread position:
               
232-630
               

               
Cow position:
               
chr3:54903742-54903337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
92, 129
               

               
Conread position:
               
232-630
               

               
Cow position:
               
chr3:68707847-68708238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 84
               

               
Conread position:
               
232-630
               

               
Cow position:
               
chr3:68880956-68881346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 73
               

               
Conread position:
               
232-630
               

               
Cow position:
               
chr3:75570271-75570673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
71, 56
               

               
Conread position:
               
232-630
               

               
Cow position:
               
chr3:80740728-80740341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
232-631
               

               
Cow position:
               
chr3:13329618-13330005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 109
               

               
Conread position:
               
232-631
               

               
Cow position:
               
chr3:31419870-31419469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
96, 184
               

               
Conread position:
               
232-631
               

               
Cow position:
               
chr3:39969688-39970104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 182
               

               
Conread position:
               
232-631
               

               
Cow position:
               
chr3:52651905-52652306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 116
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:525502-525121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:2392794-2393199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 114
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:5374484-5374100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 34
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:8393514-8393113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:17936672-17937072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
172, 95
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:20996827-20997213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:21081205-21081619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:23091822-23092216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
176, 52
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:24852414-24852820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:45882074-45881676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 182
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:49460751-49461170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 48
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:55189575-55189984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
75, 185
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:56476849-56476449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 47
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:59366709-59366314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
177, 106
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:59474295-59473879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
63, 113
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:59610544-59610957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
92, 60
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:61857683-61857263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:77365117-77365527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:78077365-78076956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 188
               

               
Conread position:
               
232-632
               

               
Cow position:
               
chr3:79884305-79884720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 132
               

               
Conread position:
               
232-633
               

               
Cow position:
               
chr3:48363244-48362849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
80, 219
               

               
Conread position:
               
232-643
               

               
Cow position:
               
chr3:13353539-13353113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
232-645
               

               
Cow position:
               
chr3:5044635-5045056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
92, 127
               

               
Conread position:
               
232-645
               

               
Cow position:
               
chr3:73395290-73394870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 53
               

               
Conread position:
               
233-380
               

               
Cow position:
               
chr3:22899557-22899712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
88, 114
               

               
Conread position:
               
233-410
               

               
Cow position:
               
chr3:23753658-23753484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 108
               

               
Conread position:
               
233-418
               

               
Cow position:
               
chr3:39996720-39996906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
233-539
               

               
Cow position:
               
chr3:3883646-3883959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 111
               

               
Conread position:
               
233-615
               

               
Cow position:
               
chr3:4319893-4319494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 232
               

               
Conread position:
               
233-628
               

               
Cow position:
               
chr3:65413092-65413505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
234-420
               

               
Cow position:
               
chr3:59272004-59271812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 114
               

               
Conread position:
               
234-561
               

               
Cow position:
               
chr3:68616162-68616487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 175
               

               
Conread position:
               
234-585
               

               
Cow position:
               
chr3:59597346-59596999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
78, 104
               

               
Conread position:
               
234-606
               

               
Cow position:
               
chr3:77582279-77581900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
71, 213
               

               
Conread position:
               
234-631
               

               
Cow position:
               
chr3:52608354-52607951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
87, 178
               

               
Conread position:
               
234-631
               

               
Cow position:
               
chr3:64280765-64281168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 86
               

               
Conread position:
               
234-631
               

               
Cow position:
               
chr3:71238322-71237925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
234-632
               

               
Cow position:
               
chr3:10958071-10958462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
234-632
               

               
Cow position:
               
chr3:65237196-65236792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 108
               

               
Conread position:
               
235-539
               

               
Cow position:
               
chr3:21014784-21015100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
235-632
               

               
Cow position:
               
chr3:30463004-30463399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 42
               

               
Conread position:
               
235-632
               

               
Cow position:
               
chr3:48241778-48241388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
236-542
               

               
Cow position:
               
chr3:3889406-3889710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
169, 70
               

               
Conread position:
               
236-621
               

               
Cow position:
               
chr3:83215440-83215031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
236-624
               

               
Cow position:
               
chr3:71161959-71161569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
236-630
               

               
Cow position:
               
chr3:53150504-53150096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 253
               

               
Conread position:
               
236-631
               

               
Cow position:
               
chr3:26970982-26970593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
236-631
               

               
Cow position:
               
chr3:70896210-70895814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
236-632
               

               
Cow position:
               
chr3:13577048-13577419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
190, 57
               

               
Conread position:
               
236-632
               

               
Cow position:
               
chr3:23471292-23471701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 108
               

               
Conread position:
               
236-632
               

               
Cow position:
               
chr3:26904270-26903882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
131, 62
               

               
Conread position:
               
236-632
               

               
Cow position:
               
chr3:54435139-54434740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 100
               

               
Conread position:
               
236-632
               

               
Cow position:
               
chr3:73764044-73764429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 78
               

               
Conread position:
               
236-632
               

               
Cow position:
               
chr3:74088006-74088407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 125
               

               
Conread position:
               
236-632
               

               
Cow position:
               
chr3:74533505-74533115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
169, 71
               

               
Conread position:
               
236-633
               

               
Cow position:
               
chr3:60597708-60597314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 107
               

               
Conread position:
               
237-449
               

               
Cow position:
               
chr3:10668709-10668931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
237-583
               

               
Cow position:
               
chr3:57274228-57273882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
237-632
               

               
Cow position:
               
chr3:7678835-7678438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
238-419
               

               
Cow position:
               
chr3:70756470-70756660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 112
               

               
Conread position:
               
238-624
               

               
Cow position:
               
chr3:49679303-49678897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
240-428
               

               
Cow position:
               
chr3:74787592-74787400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
240-539
               

               
Cow position:
               
chr3:73820198-73820510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
242-419
               

               
Cow position:
               
chr3:62370222-62370037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 117
               

               
Conread position:
               
242-631
               

               
Cow position:
               
chr3:65969339-65968922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
242-631
               

               
Cow position:
               
chr3:74500422-74499992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
45, 52
               

               
Conread position:
               
242-632
               

               
Cow position:
               
chr3:72585-72182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
156, 64
               

               
Conread position:
               
242-632
               

               
Cow position:
               
chr3:17221968-17222377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
62, 225
               

               
Conread position:
               
242-632
               

               
Cow position:
               
chr3:51233939-51234329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 79
               

               
Conread position:
               
242-632
               

               
Cow position:
               
chr3:55124120-55124511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
243-632
               

               
Cow position:
               
chr3:20471221-20471593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
172, 44
               

               
Conread position:
               
243-632
               

               
Cow position:
               
chr3:78443403-78443796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 120
               

               
Conread position:
               
243-633
               

               
Cow position:
               
chr3:59000599-59000980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 98
               

               
Conread position:
               
244-632
               

               
Cow position:
               
chr3:80053386-80053767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
164, 102
               

               
Conread position:
               
244-645
               

               
Cow position:
               
chr3:45647829-45647430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
246-393
               

               
Cow position:
               
chr3:6579641-6579493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
246-400
               

               
Cow position:
               
chr3:5003793-5003634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
246-536
               

               
Cow position:
               
chr3:13380117-13380424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
63, 107
               

               
Conread position:
               
246-551
               

               
Cow position:
               
chr3:19793429-19793745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
79, 102
               

               
Conread position:
               
246-627
               

               
Cow position:
               
chr3:2036465-2036070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 167
               

               
Conread position:
               
246-628
               

               
Cow position:
               
chr3:66900566-66900971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
246-631
               

               
Cow position:
               
chr3:58540356-58540765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
60, 107
               

               
Conread position:
               
246-632
               

               
Cow position:
               
chr3:7566260-7566652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 97
               

               
Conread position:
               
246-632
               

               
Cow position:
               
chr3:70334531-70334934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
82, 113
               

               
Conread position:
               
246-632
               

               
Cow position:
               
chr3:75158516-75158132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
246-633
               

               
Cow position:
               
chr3:53046497-53046891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 216
               

               
Conread position:
               
246-635
               

               
Cow position:
               
chr3:78092350-78092745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
246-650
               

               
Cow position:
               
chr3:82055967-82056369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
251, 51
               

               
Conread position:
               
247-550
               

               
Cow position:
               
chr3:12978455-12978768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
79, 110
               

               
Conread position:
               
247-584
               

               
Cow position:
               
chr3:74079478-74079824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 226
               

               
Conread position:
               
247-643
               

               
Cow position:
               
chr3:11987488-11987083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
73, 109
               

               
Conread position:
               
248-626
               

               
Cow position:
               
chr3:74119271-74119673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
251-524
               

               
Cow position:
               
chr3:56678191-56678479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
251-632
               

               
Cow position:
               
chr3:18855234-18854860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 110
               

               
Conread position:
               
252-628
               

               
Cow position:
               
chr3:34271054-34270700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
99, 39
               

               
Conread position:
               
252-632
               

               
Cow position:
               
chr3:15388374-15387978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
257-616
               

               
Cow position:
               
chr3:25945245-25944860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
259-624
               

               
Cow position:
               
chr3:74134855-74134480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
261-590
               

               
Cow position:
               
chr3:44102113-44101778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 94
               

               
Conread position:
               
261-631
               

               
Cow position:
               
chr3:55010025-55010387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 80
               

               
Conread position:
               
261-632
               

               
Cow position:
               
chr3:72391234-72390847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 101
               

               
Conread position:
               
262-632
               

               
Cow position:
               
chr3:54960311-54959957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 80
               

               
Conread position:
               
270-645
               

               
Cow position:
               
chr3:68582870-68583249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
271-632
               

               
Cow position:
               
chr3:77271142-77271500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
273-632
               

               
Cow position:
               
chr3:6690137-6689761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
273-632
               

               
Cow position:
               
chr3:6873129-6873478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
227, 30
               

               
Conread position:
               
273-632
               

               
Cow position:
               
chr3:73709181-73708816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 140
               

               
Conread position:
               
277-632
               

               
Cow position:
               
chr3:80565094-80564727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
44, 163
               

               
Conread position:
               
279-632
               

               
Cow position:
               
chr3:28898091-28898456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
285-631
               

               
Cow position:
               
chr3:82461298-82460952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 168
               

               
Conread position:
               
290-632
               

               
Cow position:
               
chr3:55835707-55836062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
292-593
               

               
Cow position:
               
chr3:66883836-66884135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
295-632
               

               
Cow position:
               
chr3:67704655-67704307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
20, 259
               

               
Conread position:
               
297-630
               

               
Cow position:
               
chr3:49650492-49650148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
298-631
               

               
Cow position:
               
chr3:73442994-73443319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
298-632
               

               
Cow position:
               
chr3:12711813-12712156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
107, 43
               

               
Conread position:
               
298-632
               

               
Cow position:
               
chr3:17934835-17935156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
299-562
               

               
Cow position:
               
chr3:59883965-59884236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
299-628
               

               
Cow position:
               
chr3:59621547-59621865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
103, 42
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr3:5097307-5096971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 12
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr3:17447514-17447841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
104, 21
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr3:45534194-45534533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 141
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr3:48296803-48296476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr3:59630412-59630732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
199, 42
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr3:70899991-70899667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr3:80072230-80071883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr3:81470989-81471334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
22, 48
               

               
Conread position:
               
300-630
               

               
Cow position:
               
chr3:38347289-38346970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
303-592
               

               
Cow position:
               
chr3:63269322-63269032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 149
               

               
Conread position:
               
303-631
               

               
Cow position:
               
chr3:38691309-38691638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
106, 38
               

               
Conread position:
               
308-630
               

               
Cow position:
               
chr3:27532561-27532893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
308-632
               

               
Cow position:
               
chr3:33327803-33327471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 128
               

               
Conread position:
               
310-632
               

               
Cow position:
               
chr3:58968811-58969129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 150
               

               
Conread position:
               
314-645
               

               
Cow position:
               
chr3:62826532-62826869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
317-632
               

               
Cow position:
               
chr3:19006741-19006434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
78, 118
               

               
Conread position:
               
318-632
               

               
Cow position:
               
chr3:79292910-79292601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
319-605
               

               
Cow position:
               
chr3:27696898-27697189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
319-632
               

               
Cow position:
               
chr3:8457736-8457422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 48
               

               
Conread position:
               
319-632
               

               
Cow position:
               
chr3:55271963-55272276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 136
               

               
Conread position:
               
319-632
               

               
Cow position:
               
chr3:56059893-56059574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
319-632
               

               
Cow position:
               
chr3:61144176-61143860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
319-632
               

               
Cow position:
               
chr3:66292094-66292412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
89, 138
               

               
Conread position:
               
319-632
               

               
Cow position:
               
chr3:70565656-70565971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 88
               

               
Conread position:
               
319-632
               

               
Cow position:
               
chr3:78945757-78946069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 91
               

               
Conread position:
               
319-645
               

               
Cow position:
               
chr3:59208876-59208568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
319-645
               

               
Cow position:
               
chr3:59588592-59588273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
320-631
               

               
Cow position:
               
chr3:27940062-27940360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 77
               

               
Conread position:
               
320-632
               

               
Cow position:
               
chr3:5100691-5100994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 87
               

               
Conread position:
               
320-632
               

               
Cow position:
               
chr3:11712046-11711720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 13
               

               
Conread position:
               
320-632
               

               
Cow position:
               
chr3:57624545-57624234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 131
               

               
Conread position:
               
321-623
               

               
Cow position:
               
chr3:43571827-43571516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 30
               

               
Conread position:
               
321-626
               

               
Cow position:
               
chr3:15506528-15506220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
321-632
               

               
Cow position:
               
chr3:4032043-4031735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
145, 50
               

               
Conread position:
               
321-632
               

               
Cow position:
               
chr3:13507548-13507230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
80, 132
               

               
Conread position:
               
321-632
               

               
Cow position:
               
chr3:61840355-61840056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 76
               

               
Conread position:
               
321-632
               

               
Cow position:
               
chr3:71430125-71430445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
322-632
               

               
Cow position:
               
chr3:52863106-52863418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
323-584
               

               
Cow position:
               
chr3:74502248-74502507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
323-589
               

               
Cow position:
               
chr3:34669656-34669918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
323-604
               

               
Cow position:
               
chr3:57760575-57760293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
323-625
               

               
Cow position:
               
chr3:26960511-26960821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
323-629
               

               
Cow position:
               
chr3:14626073-14626382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
323-631
               

               
Cow position:
               
chr3:52017848-52017525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:2680590-2680278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
123, 26
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:14263469-14263159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:36671918-36672236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:37599351-37599649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
85, 28
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:42423251-42423564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:49383026-49382719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:51012476-51012766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
220, 18
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:53113252-53112936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:55085092-55085417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:58767340-58767046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:75045799-75046105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
323-632
               

               
Cow position:
               
chr3:80581732-80581438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
177, 18
               

               
Conread position:
               
324-631
               

               
Cow position:
               
chr3:2216444-2216127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
324-632
               

               
Cow position:
               
chr3:46901274-46900961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
325-593
               

               
Cow position:
               
chr3:3638253-3637992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
173, 16
               

               
Conread position:
               
325-632
               

               
Cow position:
               
chr3:8394017-8393706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
325-632
               

               
Cow position:
               
chr3:59691963-59691671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
325-633
               

               
Cow position:
               
chr3:70401971-70401668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
325-645
               

               
Cow position:
               
chr3:72676166-72675841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
328-632
               

               
Cow position:
               
chr3:15684849-15685150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 36
               

               
Conread position:
               
328-632
               

               
Cow position:
               
chr3:44861239-44861541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 39
               

               
Conread position:
               
333-632
               

               
Cow position:
               
chr3:26553648-26553945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
334-631
               

               
Cow position:
               
chr3:17895914-17895622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
335-628
               

               
Cow position:
               
chr3:76015358-76015070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 72
               

               
Conread position:
               
335-630
               

               
Cow position:
               
chr3:23444822-23445121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
73, 159
               

               
Conread position:
               
340-554
               

               
Cow position:
               
chr3:24935426-24935215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
340-631
               

               
Cow position:
               
chr3:72131237-72131529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
73, 92
               

               
Conread position:
               
340-632
               

               
Cow position:
               
chr3:20437595-20437879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 112
               

               
Conread position:
               
340-635
               

               
Cow position:
               
chr3:73759456-73759756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
68, 48
               

               
Conread position:
               
342-631
               

               
Cow position:
               
chr3:72019175-72018887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 145
               

               
Conread position:
               
351-613
               

               
Cow position:
               
chr3:74878539-74878804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
351-627
               

               
Cow position:
               
chr3:22089227-22089510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
25, 29
               

               
Conread position:
               
351-632
               

               
Cow position:
               
chr3:51604565-51604840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
189, 58
               

               
Conread position:
               
351-632
               

               
Cow position:
               
chr3:61539851-61539563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
351-632
               

               
Cow position:
               
chr3:66609794-66610071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 99
               

               
Conread position:
               
351-644
               

               
Cow position:
               
chr3:31206926-31206627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
352-632
               

               
Cow position:
               
chr3:79220907-79220617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
352-633
               

               
Cow position:
               
chr3:14632934-14633221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 108
               

               
Conread position:
               
353-627
               

               
Cow position:
               
chr3:80818765-80818500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 54
               

               
Conread position:
               
355-627
               

               
Cow position:
               
chr3:50763167-50762896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 54
               

               
Conread position:
               
356-632
               

               
Cow position:
               
chr3:66375365-66375088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
357-631
               

               
Cow position:
               
chr3:53572708-53572982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
82, 50
               

               
Conread position:
               
361-629
               

               
Cow position:
               
chr3:19708068-19708332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
137, 90
               

               
Conread position:
               
361-632
               

               
Cow position:
               
chr3:22820611-22820336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
361-632
               

               
Cow position:
               
chr3:39171446-39171717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
105, 48
               

               
Conread position:
               
361-632
               

               
Cow position:
               
chr3:65800625-65800360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
366-632
               

               
Cow position:
               
chr3:83815752-83816026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
366-645
               

               
Cow position:
               
chr3:63332853-63332564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
39, 66
               

               
Conread position:
               
368-615
               

               
Cow position:
               
chr3:35005809-35005561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 84
               

               
Conread position:
               
368-631
               

               
Cow position:
               
chr3:43528199-43528469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 128
               

               
Conread position:
               
370-630
               

               
Cow position:
               
chr3:29807494-29807231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
99, 37
               

               
Conread position:
               
370-645
               

               
Cow position:
               
chr3:33698762-33698475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
371-632
               

               
Cow position:
               
chr3:48269887-48269630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
371-632
               

               
Cow position:
               
chr3:60892655-60892399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 81
               

               
Conread position:
               
372-632
               

               
Cow position:
               
chr3:55947613-55947342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
373-631
               

               
Cow position:
               
chr3:75057106-75057351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
374-637
               

               
Cow position:
               
chr3:35852444-35852705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 115
               

               
Conread position:
               
375-613
               

               
Cow position:
               
chr3:39328426-39328186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 198
               

               
Conread position:
               
379-632
               

               
Cow position:
               
chr3:59451612-59451361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
379-645
               

               
Cow position:
               
chr3:55106417-55106689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
381-632
               

               
Cow position:
               
chr3:5416200-5416464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
384-632
               

               
Cow position:
               
chr3:77227337-77227085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
391-632
               

               
Cow position:
               
chr3:69849497-69849735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
391-645
               

               
Cow position:
               
chr3:45648145-45647893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
393-625
               

               
Cow position:
               
chr3:66866395-66866626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
394-632
               

               
Cow position:
               
chr3:59515107-59514878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
394-633
               

               
Cow position:
               
chr3:48530640-48530403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
394-645
               

               
Cow position:
               
chr3:46350680-46350413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 264
               

               
Conread position:
               
395-631
               

               
Cow position:
               
chr3:80081807-80082050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 185
               

               
Conread position:
               
399-632
               

               
Cow position:
               
chr3:18763892-18763661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
400-632
               

               
Cow position:
               
chr3:51255789-51255551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
68, 58
               

               
Conread position:
               
401-632
               

               
Cow position:
               
chr3:17952655-17952423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
402-619
               

               
Cow position:
               
chr3:15859671-15859891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
181, 56
               

               
Conread position:
               
402-632
               

               
Cow position:
               
chr3:9843582-9843350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
403-632
               

               
Cow position:
               
chr3:42483904-42483667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
409-627
               

               
Cow position:
               
chr3:16362745-16362966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
411-603
               

               
Cow position:
               
chr3:59885379-59885180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
411-613
               

               
Cow position:
               
chr3:25060066-25059859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
89, 47
               

               
Conread position:
               
411-632
               

               
Cow position:
               
chr3:63860903-63861134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 40
               

               
Conread position:
               
411-633
               

               
Cow position:
               
chr3:41366994-41367218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
41, 127
               

               
Conread position:
               
411-633
               

               
Cow position:
               
chr3:59271529-59271317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
412-631
               

               
Cow position:
               
chr3:28692444-28692662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 69
               

               
Conread position:
               
412-632
               

               
Cow position:
               
chr3:19789129-19789352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
123, 38
               

               
Conread position:
               
412-632
               

               
Cow position:
               
chr3:44534774-44535000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
412-632
               

               
Cow position:
               
chr3:47284821-47284604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
412-632
               

               
Cow position:
               
chr3:49731654-49731871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
412-645
               

               
Cow position:
               
chr3:2903308-2903536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 36
               

               
Conread position:
               
414-632
               

               
Cow position:
               
chr3:67161927-67161698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
414-643
               

               
Cow position:
               
chr3:5899808-5899578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
415-629
               

               
Cow position:
               
chr3:4087177-4087396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 165
               

               
Conread position:
               
418-628
               

               
Cow position:
               
chr3:45307915-45307705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
82, 35
               

               
Conread position:
               
429-632
               

               
Cow position:
               
chr3:78201244-78201034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
441-630
               

               
Cow position:
               
chr3:73590040-73590230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
443-601
               

               
Cow position:
               
chr3:7940598-7940758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
443-631
               

               
Cow position:
               
chr3:2008219-2008037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
444-632
               

               
Cow position:
               
chr3:52650574-52650766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
447-632
               

               
Cow position:
               
chr3:15661746-15661933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 124
               

               
Conread position:
               
455-632
               

               
Cow position:
               
chr3:25691700-25691516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 114
               

               
Conread position:
               
455-632
               

               
Cow position:
               
chr3:83921142-83920965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
455-633
               

               
Cow position:
               
chr3:58951561-58951387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
86, 42
               

               
Conread position:
               
458-630
               

               
Cow position:
               
chr3:82359985-82359814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
458-632
               

               
Cow position:
               
chr3:42588300-42588116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
458-633
               

               
Cow position:
               
chr3:2483389-2483219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
460-645
               

               
Cow position:
               
chr3:79208057-79208249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
462-632
               

               
Cow position:
               
chr3:23277604-23277775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
463-624
               

               
Cow position:
               
chr3:42367564-42367724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
463-627
               

               
Cow position:
               
chr3:23215634-23215812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
463-632
               

               
Cow position:
               
chr3:12287169-12287002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
112, 44
               

               
Conread position:
               
463-632
               

               
Cow position:
               
chr3:22872109-22872285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
470-632
               

               
Cow position:
               
chr3:27286163-27285992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
470-632
               

               
Cow position:
               
chr3:61678625-61678458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
470-637
               

               
Cow position:
               
chr3:3164564-3164733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 167
               

               
Conread position:
               
471-631
               

               
Cow position:
               
chr3:8717182-8717013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 9
               

               
Conread position:
               
471-632
               

               
Cow position:
               
chr3:84000543-84000379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
474-630
               

               
Cow position:
               
chr3:51609748-51609585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
476-627
               

               
Cow position:
               
chr3:55971151-55970997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
476-632
               

               
Cow position:
               
chr3:53222716-53222875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
477-645
               

               
Cow position:
               
chr3:61467532-61467359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
478-632
               

               
Cow position:
               
chr3:23945020-23944864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
478-632
               

               
Cow position:
               
chr3:53904102-53903953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 56
               

               
Conread position:
               
480-632
               

               
Cow position:
               
chr3:4861609-4861456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
481-630
               

               
Cow position:
               
chr3:11640353-11640203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
481-660
               

               
Cow position:
               
chr3:30055527-30055707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
485-615
               

               
Cow position:
               
chr3:75535027-75534896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
491-614
               

               
Cow position:
               
chr3:5082730-5082857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
492-629
               

               
Cow position:
               
chr3:55445271-55445133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
493-631
               

               
Cow position:
               
chr3:35074589-35074449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
493-632
               

               
Cow position:
               
chr3:5851017-5851161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
493-632
               

               
Cow position:
               
chr3:8604108-8604247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
493-645
               

               
Cow position:
               
chr3:69961808-69961957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
494-618
               

               
Cow position:
               
chr3:55062962-55063087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
494-631
               

               
Cow position:
               
chr3:77496726-77496585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
495-624
               

               
Cow position:
               
chr3:56301440-56301573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
495-627
               

               
Cow position:
               
chr3:15192472-15192336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
495-629
               

               
Cow position:
               
chr3:42594749-42594887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
495-631
               

               
Cow position:
               
chr3:10347259-10347123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
495-631
               

               
Cow position:
               
chr3:19198579-19198449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:14717714-14717573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:16004086-16004219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:23270002-23269869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:26894565-26894428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 101
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:31047047-31047182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:31501255-31501114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:34392193-34392330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
67, 71
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:35283190-35283331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:41328352-41328222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:56704640-56704770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:77276503-77276638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:78067229-78067371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr3:80922473-80922335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 94
               

               
Conread position:
               
495-645
               

               
Cow position:
               
chr3:79196476-79196622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
496-632
               

               
Cow position:
               
chr3:18607275-18607136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
497-645
               

               
Cow position:
               
chr3:22716379-22716526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
499-632
               

               
Cow position:
               
chr3:17451030-17451167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
501-632
               

               
Cow position:
               
chr3:16752356-16752486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
501-632
               

               
Cow position:
               
chr3:65020234-65020101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
501-632
               

               
Cow position:
               
chr3:83201626-83201761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
503-632
               

               
Cow position:
               
chr3:29334615-29334747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
503-632
               

               
Cow position:
               
chr3:58383864-58383735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
503-645
               

               
Cow position:
               
chr3:36656873-36657016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
505-620
               

               
Cow position:
               
chr3:16656583-16656702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
505-632
               

               
Cow position:
               
chr3:33693544-33693416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
505-632
               

               
Cow position:
               
chr3:58158569-58158700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
505-632
               

               
Cow position:
               
chr3:61262698-61262570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
509-632
               

               
Cow position:
               
chr3:22907941-22908067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
509-645
               

               
Cow position:
               
chr3:84368482-84368616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
30, 81
               

               
Conread position:
               
510-632
               

               
Cow position:
               
chr3:77006389-77006272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
526-637
               

               
Cow position:
               
chr3:58286025-58286135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 17
               
Show alignments to all cow chromosomes.