Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8034E14.3 |
| Conread position: | 1-124 |
| Cow position: | chr18:10221582-10221464 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-153 |
| Cow position: | chr18:33521765-33521621 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-161 |
| Cow position: | chr18:16174055-16174207 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-162 |
| Cow position: | chr18:27538967-27538814 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 141, 29 |
| Conread position: | 1-171 |
| Cow position: | chr18:18216060-18215895 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-174 |
| Cow position: | chr18:16558255-16558089 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-174 |
| Cow position: | chr18:51273552-51273714 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:603905-604071 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:1956617-1956787 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:3755496-3755326 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 145 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:11272296-11272461 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:14128735-14128898 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:16081077-16080907 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:16464309-16464474 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:19354915-19354745 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:21530077-21529910 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:22182977-22183140 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:27835533-27835702 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:30762406-30762576 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:32165377-32165543 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:32437550-32437720 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:32770295-32770131 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:35295727-35295557 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:37700937-37701107 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:51344656-51344493 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:51460289-51460456 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:51662701-51662531 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:51696846-51696675 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 127, 43 |
| Conread position: | 1-176 |
| Cow position: | chr18:52630696-52630862 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:55417276-55417109 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-177 |
| Cow position: | chr18:25353800-25353632 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-177 |
| Cow position: | chr18:29239651-29239485 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-177 |
| Cow position: | chr18:32656242-32656071 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:5535546-5535372 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:14132947-14132773 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:14418528-14418351 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 1-180 |
| Cow position: | chr18:16092370-16092196 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:17322958-17322785 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:19457421-19457243 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 1-180 |
| Cow position: | chr18:23702531-23702702 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:23801574-23801403 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:25922944-25922770 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:26244026-26244197 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:28929039-28929207 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:28969735-28969906 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:29222919-29222751 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-180 |
| Cow position: | chr18:29864054-29864227 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:33101878-33101704 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:36647726-36647552 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:36775828-36775654 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:37508517-37508346 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:40483558-40483387 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:51484149-51483975 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 110, 47 |
| Conread position: | 1-180 |
| Cow position: | chr18:52655366-52655195 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr18:54272980-54272810 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-181 |
| Cow position: | chr18:15171428-15171258 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-186 |
| Cow position: | chr18:5202078-5201898 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-197 |
| Cow position: | chr18:38160307-38160497 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-158 |
| Cow position: | chr18:28083605-28083454 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 2-174 |
| Cow position: | chr18:54026351-54026187 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-176 |
| Cow position: | chr18:5077514-5077683 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-176 |
| Cow position: | chr18:25941454-25941285 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-176 |
| Cow position: | chr18:54168331-54168499 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 3-174 |
| Cow position: | chr18:9661265-9661103 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 3-176 |
| Cow position: | chr18:33988010-33987842 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-176 |
| Cow position: | chr18:37677079-37676914 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 3-176 |
| Cow position: | chr18:40158876-40158711 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-180 |
| Cow position: | chr18:14814788-14814619 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 30 |
| Conread position: | 3-180 |
| Cow position: | chr18:15857728-15857558 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-180 |
| Cow position: | chr18:27168182-27168007 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 4-180 |
| Cow position: | chr18:36511169-36511001 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 7-176 |
| Cow position: | chr18:28767348-28767184 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 7-194 |
| Cow position: | chr18:54032256-54032074 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 11-180 |
| Cow position: | chr18:4948487-4948325 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 151, 28 |
| Conread position: | 14-176 |
| Cow position: | chr18:1046896-1046739 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 15-176 |
| Cow position: | chr18:47744033-47743877 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 16-176 |
| Cow position: | chr18:40080145-40080297 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 33-180 |
| Cow position: | chr18:39813109-39813251 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 60-179 |
| Cow position: | chr18:13477486-13477366 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 61-180 |
| Cow position: | chr18:37664897-37664779 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 68-180 |
| Cow position: | chr18:56035880-56035768 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.