Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8034E14.3 |
| Conread position: | 1-133 |
| Cow position: | chr20:16105951-16105827 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-133 |
| Cow position: | chr20:39233750-39233622 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-146 |
| Cow position: | chr20:6136469-6136609 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-146 |
| Cow position: | chr20:16560022-16560162 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-162 |
| Cow position: | chr20:28724288-28724134 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-173 |
| Cow position: | chr20:8890285-8890123 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-174 |
| Cow position: | chr20:20491871-20491704 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:752667-752497 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:825296-825132 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:7513860-7513690 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:8971371-8971529 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:18093665-18093835 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:18355750-18355580 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:19440435-19440268 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:19844310-19844144 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:20440432-20440600 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:24541945-24541775 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:28444828-28444997 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:29757758-29757928 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:30430791-30430624 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:30578411-30578241 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:33598953-33598783 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-176 |
| Cow position: | chr20:35844793-35844960 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-177 |
| Cow position: | chr20:17659226-17659394 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-177 |
| Cow position: | chr20:30688093-30687923 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 1-179 |
| Cow position: | chr20:15602242-15602415 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:5537448-5537278 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:6476050-6475882 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:10922399-10922573 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:12435877-12436048 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:12568791-12568965 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:13654763-13654930 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:13765417-13765243 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:15095383-15095552 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:19424566-19424403 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:21397046-21396877 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:21719085-21718911 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:23801411-23801237 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:23805358-23805531 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:25846101-25846268 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:27876002-27875830 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:28163564-28163393 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:35144360-35144534 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-180 |
| Cow position: | chr20:35160060-35160232 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-176 |
| Cow position: | chr20:5076524-5076357 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 2-176 |
| Cow position: | chr20:34459785-34459954 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-177 |
| Cow position: | chr20:12047033-12046865 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 2-180 |
| Cow position: | chr20:14721863-14722034 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 3-161 |
| Cow position: | chr20:32351070-32350917 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 3-175 |
| Cow position: | chr20:13500818-13500655 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 3-177 |
| Cow position: | chr20:39881859-39881690 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 4-175 |
| Cow position: | chr20:35019438-35019276 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 4-180 |
| Cow position: | chr20:7598335-7598506 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 4-180 |
| Cow position: | chr20:10867268-10867439 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 5-176 |
| Cow position: | chr20:28561397-28561562 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 5-180 |
| Cow position: | chr20:23467148-23467318 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 18-176 |
| Cow position: | chr20:13723470-13723617 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 20-177 |
| Cow position: | chr20:19342315-19342163 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 36-180 |
| Cow position: | chr20:21917132-21916992 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 56-180 |
| Cow position: | chr20:8754085-8753961 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-254 |
| Cow position: | chr20:8200586-8200778 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 59-176 |
| Cow position: | chr20:30385757-30385875 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.