Cow genome map

Conread name: Ss1.1-Pig4-TMW8034E14.3

Conread position: 1-127
Cow position: chr21:19352231-19352352 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 1-145
Cow position: chr21:10852897-10852761 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 1-160
Cow position: chr21:17143308-17143154 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 1-161
Cow position: chr21:7154965-7154811 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 131
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 1-161
Cow position: chr21:33317872-33318026 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 1-162
Cow position: chr21:4481928-4481772 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 135
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 38, 0

Conread position: 1-168
Cow position: chr21:49297457-49297295 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 119, 43

Conread position: 1-174
Cow position: chr21:5631343-5631509 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-174
Cow position: chr21:6966835-6966996 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 1-175
Cow position: chr21:36375620-36375451 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 142
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:2513483-2513313 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:3922853-3922683 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:4036883-4036715 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 1-176
Cow position: chr21:4091965-4091799 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:7063038-7063208 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 142
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:11291320-11291151 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 141
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:26634526-26634696 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:27068329-27068499 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:27620866-27621035 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 145
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:32397419-32397589 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 142
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:34902750-34902913 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:37373858-37373688 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 141
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:39225424-39225594 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:39427708-39427538 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 0

Conread position: 1-176
Cow position: chr21:41797091-41797261 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 142
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 38, 0

Conread position: 1-177
Cow position: chr21:41854-41681 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 52, 38

Conread position: 1-177
Cow position: chr21:995797-995965 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 23, 39

Conread position: 1-177
Cow position: chr21:44763330-44763495 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 1-179
Cow position: chr21:35143275-35143445 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 143
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 1-180
Cow position: chr21:2538518-2538691 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 1-180
Cow position: chr21:2879196-2879366 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:3781418-3781235 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 38

Conread position: 1-180
Cow position: chr21:3805559-3805385 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 143
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 34, 0

Conread position: 1-180
Cow position: chr21:4078679-4078512 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:5019777-5019604 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 1-180
Cow position: chr21:9894781-9894606 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 136, 46

Conread position: 1-180
Cow position: chr21:10569325-10569155 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 1-180
Cow position: chr21:13112761-13112928 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:21026113-21025934 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 39

Conread position: 1-180
Cow position: chr21:24948738-24948571 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 16, 39

Conread position: 1-180
Cow position: chr21:27148924-27149098 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 143
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:27286076-27285907 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:27610110-27610284 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:30596457-30596631 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:31513687-31513859 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:34072944-34073130 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 1-180
Cow position: chr21:34255961-34256132 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:34656593-34656417 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 86, 38

Conread position: 1-180
Cow position: chr21:37123724-37123898 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 146
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 0

Conread position: 1-180
Cow position: chr21:47943583-47943413 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 1-180
Cow position: chr21:48529790-48529960 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 1-182
Cow position: chr21:2665507-2665683 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 2-161
Cow position: chr21:21918114-21917960 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 36

Conread position: 2-176
Cow position: chr21:28987769-28987605 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 2-176
Cow position: chr21:47976467-47976298 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 141
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 37, 0

Conread position: 2-180
Cow position: chr21:79372-79548 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 2-180
Cow position: chr21:5011106-5011278 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 3-174
Cow position: chr21:36978274-36978439 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 3-176
Cow position: chr21:22462824-22462657 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 3-176
Cow position: chr21:39079839-39080015 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 30

Conread position: 3-177
Cow position: chr21:37039987-37040154 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 0

Conread position: 3-180
Cow position: chr21:2418835-2418664 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 36, 0

Conread position: 3-180
Cow position: chr21:22943246-22943074 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 130, 36

Conread position: 3-180
Cow position: chr21:46758541-46758378 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 4-176
Cow position: chr21:29949336-29949501 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 140
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 0

Conread position: 4-176
Cow position: chr21:47647964-47647798 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 4-180
Cow position: chr21:28853215-28853388 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 107, 54

Conread position: 6-156
Cow position: chr21:5594356-5594211 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 132, 33

Conread position: 6-176
Cow position: chr21:7163354-7163519 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 6-180
Cow position: chr21:46969054-46969222 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 35

Conread position: 7-173
Cow position: chr21:49091812-49091974 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 32

Conread position: 9-177
Cow position: chr21:28879091-28879251 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 10-180
Cow position: chr21:1195165-1195003 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 0

Conread position: 14-177
Cow position: chr21:28614935-28614779 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 16-180
Cow position: chr21:1285614-1285771 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 16-189
Cow position: chr21:30352561-30352395 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 10, 16

Conread position: 17-171
Cow position: chr21:31251624-31251476 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 0

Conread position: 23-176
Cow position: chr21:650288-650435 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 32-174
Cow position: chr21:33662888-33662753 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 35-180
Cow position: chr21:4587402-4587537 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 36-176
Cow position: chr21:4899577-4899714 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 36, 22

Conread position: 36-176
Cow position: chr21:7038947-7038811 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 22, 0

Conread position: 36-180
Cow position: chr21:26401155-26401292 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 36-180
Cow position: chr21:28258013-28257876 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 59-176
Cow position: chr21:37150784-37150667 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 61-177
Cow position: chr21:48487341-48487226 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 61-180
Cow position: chr21:40269095-40269211 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 63-176
Cow position: chr21:11508185-11508072 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 92

Conread position: 63-176
Cow position: chr21:19352500-19352387 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 63-180
Cow position: chr21:44254197-44254080 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 65-180
Cow position: chr21:35390556-35390671 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.