Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8039E19.5
        

               Conread position:
               175-562
               

               Cow position:
               chr17:12445804-12446206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 94
               

               Conread position:
               178-341
               

               Cow position:
               chr17:36858308-36858140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               32, 37
               

               Conread position:
               191-553
               

               Cow position:
               chr17:28583662-28583279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               95, 81
               

               Conread position:
               241-501
               

               Cow position:
               chr17:195720-195441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               559-823
               

               Cow position:
               chr17:35966449-35966196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               195
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               258, 51
               

               Conread position:
               560-811
               

               Cow position:
               chr17:27112358-27112602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               159, 37
               

               Conread position:
               560-813
               

               Cow position:
               chr17:26716882-26716643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               560-826
               

               Cow position:
               chr17:1511091-1510830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               159, 29
               

               Conread position:
               561-803
               

               Cow position:
               chr17:35046875-35046642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               157, 26
               

               Conread position:
               562-817
               

               Cow position:
               chr17:26749543-26749794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               157, 51
               

               Conread position:
               615-817
               

               Cow position:
               chr17:21963473-21963672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               104, 71
               

               Conread position:
               662-813
               

               Cow position:
               chr17:39370745-39370894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               106, 0
               
Show alignments to all cow chromosomes.