Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039E19.5 |
| Conread position: | 175-502 |
| Cow position: | chr3:16133071-16132727 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 17 |
| Conread position: | 175-562 |
| Cow position: | chr3:66616999-66616585 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 274 |
| Conread position: | 178-371 |
| Cow position: | chr3:20916012-20915806 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 178-418 |
| Cow position: | chr3:21940955-21941191 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 178-532 |
| Cow position: | chr3:14928015-14928376 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 124, 97 |
| Conread position: | 178-562 |
| Cow position: | chr3:49356170-49356564 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 161 |
| Conread position: | 183-435 |
| Cow position: | chr3:27371389-27371653 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 184-384 |
| Cow position: | chr3:3516640-3516847 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 184-527 |
| Cow position: | chr3:67656128-67655759 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 184-569 |
| Cow position: | chr3:42471247-42471639 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 189-491 |
| Cow position: | chr3:64159400-64159090 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 114, 42 |
| Conread position: | 189-534 |
| Cow position: | chr3:33631220-33630849 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 115, 32 |
| Conread position: | 189-562 |
| Cow position: | chr3:46931211-46931598 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 189-562 |
| Cow position: | chr3:55993005-55992615 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 25 |
| Conread position: | 189-563 |
| Cow position: | chr3:25167637-25167255 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 278 |
| Conread position: | 228-571 |
| Cow position: | chr3:42567321-42567675 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 97 |
| Conread position: | 234-564 |
| Cow position: | chr3:71249358-71249023 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 194 |
| Conread position: | 335-563 |
| Cow position: | chr3:48371417-48371646 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 557-817 |
| Cow position: | chr3:46731120-46730859 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 133, 48 |
| Conread position: | 560-816 |
| Cow position: | chr3:18880717-18880461 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 113, 44 |
| Conread position: | 560-816 |
| Cow position: | chr3:56608977-56608731 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 560-816 |
| Cow position: | chr3:57987118-57987374 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 562-809 |
| Cow position: | chr3:48811801-48812044 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 161, 48 |
| Conread position: | 566-818 |
| Cow position: | chr3:67480538-67480285 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 570-778 |
| Cow position: | chr3:81481399-81481606 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 614-810 |
| Cow position: | chr3:44506859-44507058 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 617-804 |
| Cow position: | chr3:33753236-33753423 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 103, 12 |
| Conread position: | 675-823 |
| Cow position: | chr3:31367247-31367395 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.