Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8039E19.5 |
| Conread position: | 178-528 |
| Cow position: | chr5:30010111-30010463 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 157, 112 |
| Conread position: | 178-559 |
| Cow position: | chr5:38776399-38775987 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 345 |
| Conread position: | 178-559 |
| Cow position: | chr5:46546441-46546050 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 178-564 |
| Cow position: | chr5:75711763-75711356 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 230 |
| Conread position: | 183-532 |
| Cow position: | chr5:23724842-23724477 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 183-532 |
| Cow position: | chr5:52773382-52773013 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 218 |
| Conread position: | 184-562 |
| Cow position: | chr5:38155095-38154725 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 218-450 |
| Cow position: | chr5:32237606-32237850 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 117, 66 |
| Conread position: | 223-517 |
| Cow position: | chr5:35502075-35501750 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 81, 228 |
| Conread position: | 228-477 |
| Cow position: | chr5:52118874-52118612 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 73, 161 |
| Conread position: | 228-562 |
| Cow position: | chr5:36182177-36182492 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 237-562 |
| Cow position: | chr5:9677093-9677434 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 66, 139 |
| Conread position: | 557-816 |
| Cow position: | chr5:52644364-52644105 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 557-830 |
| Cow position: | chr5:37266619-37266348 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 48 |
| Conread position: | 558-716 |
| Cow position: | chr5:35641637-35641481 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 101, 45 |
| Conread position: | 560-804 |
| Cow position: | chr5:72043965-72043726 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 560-817 |
| Cow position: | chr5:18469318-18469071 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 224, 43 |
| Conread position: | 560-823 |
| Cow position: | chr5:21638045-21637790 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 163, 53 |
| Conread position: | 561-823 |
| Cow position: | chr5:38373443-38373180 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 250, 57 |
| Conread position: | 562-749 |
| Cow position: | chr5:4139862-4140048 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 154, 39 |
| Conread position: | 563-818 |
| Cow position: | chr5:25402773-25402520 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 597-817 |
| Cow position: | chr5:40886757-40886973 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 122, 21 |
Show alignments to all cow chromosomes.