Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048C15.3 |
| Conread position: | 308-621 |
| Cow position: | chr13:5656652-5656337 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 312-488 |
| Cow position: | chr13:22701742-22701917 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 312-488 |
| Cow position: | chr13:30484787-30484615 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 120, 10 |
| Conread position: | 312-530 |
| Cow position: | chr13:16551338-16551129 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 312-592 |
| Cow position: | chr13:5430602-5430311 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 120, 124 |
| Conread position: | 312-657 |
| Cow position: | chr13:52986052-52985686 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 77, 56 |
| Conread position: | 315-683 |
| Cow position: | chr13:24109326-24108952 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 109, 96 |
| Conread position: | 316-676 |
| Cow position: | chr13:11170850-11170479 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 103 |
| Conread position: | 324-491 |
| Cow position: | chr13:12912276-12912112 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 104, 129 |
| Conread position: | 324-565 |
| Cow position: | chr13:50790352-50790597 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 108, 131 |
| Conread position: | 324-627 |
| Cow position: | chr13:21388995-21388699 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 106, 93 |
| Conread position: | 324-628 |
| Cow position: | chr13:27737896-27738208 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 131 |
| Conread position: | 324-638 |
| Cow position: | chr13:46221813-46222139 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 324-646 |
| Cow position: | chr13:12570411-12570080 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 108, 41 |
| Conread position: | 324-650 |
| Cow position: | chr13:22114978-22114652 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 146, 24 |
| Conread position: | 324-666 |
| Cow position: | chr13:13532817-13533192 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 324-669 |
| Cow position: | chr13:24153908-24153556 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 134, 24 |
| Conread position: | 324-670 |
| Cow position: | chr13:46134420-46134053 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 324-675 |
| Cow position: | chr13:16988739-16988366 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 108, 89 |
| Conread position: | 324-675 |
| Cow position: | chr13:54071664-54071318 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 31 |
| Conread position: | 325-515 |
| Cow position: | chr13:48484358-48484549 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 173, 93 |
| Conread position: | 326-642 |
| Cow position: | chr13:2980586-2980922 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 326-670 |
| Cow position: | chr13:35008742-35009084 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 106, 119 |
| Conread position: | 326-670 |
| Cow position: | chr13:41564929-41564557 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 103, 74 |
| Conread position: | 327-676 |
| Cow position: | chr13:15402278-15402635 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 94, 6 |
| Conread position: | 331-633 |
| Cow position: | chr13:21856089-21856411 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 331-669 |
| Cow position: | chr13:42854777-42855114 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 100, 112 |
| Conread position: | 334-675 |
| Cow position: | chr13:41654500-41654838 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 31, 113 |
| Conread position: | 338-569 |
| Cow position: | chr13:36403878-36404112 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 128 |
| Conread position: | 345-660 |
| Cow position: | chr13:48787174-48787518 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 87, 109 |
| Conread position: | 345-670 |
| Cow position: | chr13:42726494-42726833 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 116 |
Show alignments to all cow chromosomes.