Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048C15.3 |
| Conread position: | 304-609 |
| Cow position: | chrX:37231417-37231740 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 286 |
| Conread position: | 304-650 |
| Cow position: | chrX:1518682-1518338 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 163, 119 |
| Conread position: | 307-568 |
| Cow position: | chrX:39236779-39237036 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 48, 43 |
| Conread position: | 310-429 |
| Cow position: | chrX:43006854-43006735 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 66, 55 |
| Conread position: | 310-489 |
| Cow position: | chrX:25924774-25924596 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 135 |
| Conread position: | 312-461 |
| Cow position: | chrX:15304560-15304412 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 312-489 |
| Cow position: | chrX:37576081-37576253 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 312-489 |
| Cow position: | chrX:39288403-39288228 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 312-578 |
| Cow position: | chrX:5909732-5909451 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 170, 52 |
| Conread position: | 312-673 |
| Cow position: | chrX:5507440-5507829 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 120, 26 |
| Conread position: | 313-671 |
| Cow position: | chrX:37128615-37128987 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 187, 15 |
| Conread position: | 314-650 |
| Cow position: | chrX:8926485-8926826 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 175, 104 |
| Conread position: | 315-675 |
| Cow position: | chrX:19320356-19320715 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 117, 126 |
| Conread position: | 324-489 |
| Cow position: | chrX:37949553-37949717 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 131 |
| Conread position: | 324-566 |
| Cow position: | chrX:11908793-11908553 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 175, 123 |
| Conread position: | 324-631 |
| Cow position: | chrX:508377-508052 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 73 |
| Conread position: | 324-642 |
| Cow position: | chrX:20178460-20178139 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 324-657 |
| Cow position: | chrX:31839286-31839637 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 104, 126 |
| Conread position: | 324-670 |
| Cow position: | chrX:39187590-39187213 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 324-673 |
| Cow position: | chrX:16229198-16228843 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 146, 125 |
| Conread position: | 324-675 |
| Cow position: | chrX:31260278-31259904 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 189, 94 |
| Conread position: | 324-675 |
| Cow position: | chrX:43789081-43788711 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 324-680 |
| Cow position: | chrX:23081070-23081440 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 106, 25 |
| Conread position: | 325-637 |
| Cow position: | chrX:37411564-37411892 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 175, 26 |
| Conread position: | 325-638 |
| Cow position: | chrX:17617543-17617226 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 175, 83 |
| Conread position: | 326-640 |
| Cow position: | chrX:39463303-39462965 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 166, 107 |
| Conread position: | 327-489 |
| Cow position: | chrX:41701697-41701861 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 5 |
| Conread position: | 327-645 |
| Cow position: | chrX:40253960-40254295 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 105, 128 |
| Conread position: | 328-579 |
| Cow position: | chrX:16988769-16989008 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 235, 16 |
| Conread position: | 330-677 |
| Cow position: | chrX:31275607-31275241 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 335-675 |
| Cow position: | chrX:5566032-5565680 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 336-600 |
| Cow position: | chrX:5069560-5069286 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 128 |
| Conread position: | 336-629 |
| Cow position: | chrX:41305844-41305540 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 88, 181 |
| Conread position: | 338-649 |
| Cow position: | chrX:17485935-17485612 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 138, 95 |
| Conread position: | 338-675 |
| Cow position: | chrX:26845308-26845665 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 94, 98 |
| Conread position: | 339-608 |
| Cow position: | chrX:30074198-30074475 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 138, 80 |
| Conread position: | 339-666 |
| Cow position: | chrX:11529314-11528968 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 316 |
| Conread position: | 340-670 |
| Cow position: | chrX:36294921-36295260 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 70, 113 |
| Conread position: | 377-675 |
| Cow position: | chrX:36270058-36270369 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 385-670 |
| Cow position: | chrX:21191626-21191920 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 66, 45 |
| Conread position: | 399-670 |
| Cow position: | chrX:822801-822512 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 451-684 |
| Cow position: | chrX:13523626-13523384 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 127 |
Show alignments to all cow chromosomes.