Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8054M19.5 |
| Conread position: | 225-488 |
| Cow position: | chr12:22570711-22570442 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 225-512 |
| Cow position: | chr12:21387130-21386837 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr12:21253500-21252862 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 225-820 |
| Cow position: | chr12:23141080-23140447 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 408 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr12:32654659-32655274 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 225-820 |
| Cow position: | chr12:37560121-37560737 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 227-648 |
| Cow position: | chr12:33119272-33119714 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 227-692 |
| Cow position: | chr12:20843732-20844187 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 227-815 |
| Cow position: | chr12:48471763-48471168 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 232-550 |
| Cow position: | chr12:31202369-31202045 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 232-639 |
| Cow position: | chr12:25099953-25099527 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-805 |
| Cow position: | chr12:1888440-1887850 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 232-819 |
| Cow position: | chr12:20996962-20996364 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 232-820 |
| Cow position: | chr12:3362059-3362658 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 232-820 |
| Cow position: | chr12:6405522-6404915 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 232-820 |
| Cow position: | chr12:11099342-11099958 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr12:27931784-27931184 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 237-820 |
| Cow position: | chr12:35345673-35346249 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 212 |
| Conread position: | 242-765 |
| Cow position: | chr12:21942868-21943411 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 237 |
| Conread position: | 242-820 |
| Cow position: | chr12:42607137-42606527 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 245-637 |
| Cow position: | chr12:600229-599836 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 245-820 |
| Cow position: | chr12:8676964-8676366 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 245-820 |
| Cow position: | chr12:27854832-27854241 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 241 |
| Conread position: | 248-820 |
| Cow position: | chr12:1403627-1404221 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 247 |
| Conread position: | 251-812 |
| Cow position: | chr12:7863735-7863162 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 374 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 251-820 |
| Cow position: | chr12:1776830-1776241 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 286 |
| Conread position: | 251-820 |
| Cow position: | chr12:42858399-42857811 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 236 |
| Conread position: | 253-820 |
| Cow position: | chr12:5144827-5145380 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 391 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 255-821 |
| Cow position: | chr12:23161787-23161185 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 258-730 |
| Cow position: | chr12:17979874-17980349 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 17 |
| Conread position: | 259-560 |
| Cow position: | chr12:349548-349854 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 259-703 |
| Cow position: | chr12:18465097-18465511 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 310 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 261-786 |
| Cow position: | chr12:24977669-24977153 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 218 |
| Conread position: | 263-677 |
| Cow position: | chr12:1478089-1477674 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 8, 89 |
| Conread position: | 281-820 |
| Cow position: | chr12:14661182-14660626 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 198 |
| Conread position: | 303-703 |
| Cow position: | chr12:21199185-21199587 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 27, 63 |
| Conread position: | 304-820 |
| Cow position: | chr12:21429203-21429732 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 307-781 |
| Cow position: | chr12:21482323-21482786 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 316-820 |
| Cow position: | chr12:21209869-21210387 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 167 |
| Conread position: | 324-645 |
| Cow position: | chr12:20430532-20430865 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 325-822 |
| Cow position: | chr12:19870125-19870609 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 92 |
| Conread position: | 326-820 |
| Cow position: | chr12:32677755-32677277 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 345-818 |
| Cow position: | chr12:24433846-24433364 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 128 |
| Conread position: | 360-723 |
| Cow position: | chr12:34174370-34174743 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 360-820 |
| Cow position: | chr12:28005158-28005595 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 213, 25 |
| Conread position: | 372-822 |
| Cow position: | chr12:19222275-19222698 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 374-820 |
| Cow position: | chr12:22204441-22203989 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 30 |
| Conread position: | 385-740 |
| Cow position: | chr12:29294556-29294220 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 187, 10 |
| Conread position: | 395-560 |
| Cow position: | chr12:20461775-20461929 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 403-820 |
| Cow position: | chr12:24994663-24994239 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 72 |
| Conread position: | 420-828 |
| Cow position: | chr12:21092392-21091995 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 247, 47 |
| Conread position: | 421-820 |
| Cow position: | chr12:8138819-8138435 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 27 |
| Conread position: | 424-819 |
| Cow position: | chr12:29445070-29445452 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 264 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 117, 51 |
| Conread position: | 427-781 |
| Cow position: | chr12:3971210-3970856 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 428-821 |
| Cow position: | chr12:17967133-17967534 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 456-812 |
| Cow position: | chr12:15078199-15078552 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 456-820 |
| Cow position: | chr12:21428234-21427869 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 473-820 |
| Cow position: | chr12:30677000-30677361 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 489-820 |
| Cow position: | chr12:22568373-22568034 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 41, 148 |
| Conread position: | 501-820 |
| Cow position: | chr12:35634110-35633798 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 509-820 |
| Cow position: | chr12:4634071-4633761 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 545-820 |
| Cow position: | chr12:3209421-3209693 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 547-820 |
| Cow position: | chr12:34174794-34175067 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 17 |
| Conread position: | 555-820 |
| Cow position: | chr12:25099016-25098752 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 72, 23 |
| Conread position: | 565-820 |
| Cow position: | chr12:20461760-20461506 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 113, 7 |
| Conread position: | 565-820 |
| Cow position: | chr12:43913307-43913562 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 577-828 |
| Cow position: | chr12:30685221-30685465 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 588-742 |
| Cow position: | chr12:32391331-32391483 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 90, 31 |
| Conread position: | 593-799 |
| Cow position: | chr12:20881602-20881806 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 598-828 |
| Cow position: | chr12:15950305-15950076 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 80, 27 |
| Conread position: | 624-820 |
| Cow position: | chr12:39038939-39038744 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 102 |
| Conread position: | 625-781 |
| Cow position: | chr12:466746-466593 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 625-820 |
| Cow position: | chr12:21310711-21310516 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 625-820 |
| Cow position: | chr12:22519452-22519256 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 626-766 |
| Cow position: | chr12:11581530-11581671 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.