Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8054M19.5 |
| Conread position: | 225-601 |
| Cow position: | chr19:33527324-33527703 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-762 |
| Cow position: | chr19:39511-40059 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 225-820 |
| Cow position: | chr19:773813-774426 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr19:5900298-5899688 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr19:7343280-7343889 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr19:28594764-28595359 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 20 |
| Conread position: | 227-658 |
| Cow position: | chr19:256477-256923 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 307 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 227-711 |
| Cow position: | chr19:50723769-50724261 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 227-827 |
| Cow position: | chr19:1588023-1587408 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 231-821 |
| Cow position: | chr19:438221-437616 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 232-820 |
| Cow position: | chr19:4386833-4387423 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr19:5730090-5730666 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 232-820 |
| Cow position: | chr19:12774334-12774926 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr19:20105945-20106548 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 232-820 |
| Cow position: | chr19:33874645-33875233 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 233-762 |
| Cow position: | chr19:32210856-32210308 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 89 |
| Conread position: | 235-820 |
| Cow position: | chr19:161907-161327 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 390 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 235-820 |
| Cow position: | chr19:39667306-39666724 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 241-580 |
| Cow position: | chr19:44031607-44031950 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 151, 63 |
| Conread position: | 242-550 |
| Cow position: | chr19:6713500-6713197 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 242-608 |
| Cow position: | chr19:11521939-11521569 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 242-718 |
| Cow position: | chr19:40816284-40815791 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 242-762 |
| Cow position: | chr19:30756447-30756977 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 83 |
| Conread position: | 242-820 |
| Cow position: | chr19:9706933-9706342 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 242-820 |
| Cow position: | chr19:35384385-35383786 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 243-820 |
| Cow position: | chr19:39391737-39392331 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 252 |
| Conread position: | 245-820 |
| Cow position: | chr19:173487-174081 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 221 |
| Conread position: | 245-820 |
| Cow position: | chr19:40851218-40850647 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 245-820 |
| Cow position: | chr19:52150454-52149860 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 248-589 |
| Cow position: | chr19:29141173-29141519 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 248-820 |
| Cow position: | chr19:39184307-39183722 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 118 |
| Conread position: | 252-820 |
| Cow position: | chr19:28580424-28579844 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 143 |
| Conread position: | 261-820 |
| Cow position: | chr19:892378-891817 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 140 |
| Conread position: | 262-749 |
| Cow position: | chr19:5027832-5027353 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 323 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 300, 37 |
| Conread position: | 262-819 |
| Cow position: | chr19:40886475-40885921 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 88 |
| Conread position: | 263-478 |
| Cow position: | chr19:48860963-48860738 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 281-802 |
| Cow position: | chr19:28405434-28404922 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 281-820 |
| Cow position: | chr19:205771-206334 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 206 |
| Conread position: | 297-819 |
| Cow position: | chr19:10509202-10508675 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 344 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 85, 177 |
| Conread position: | 297-820 |
| Cow position: | chr19:33942858-33943389 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 183 |
| Conread position: | 302-821 |
| Cow position: | chr19:788699-789212 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 344 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 39, 155 |
| Conread position: | 310-820 |
| Cow position: | chr19:16319330-16318807 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 172 |
| Conread position: | 319-820 |
| Cow position: | chr19:264958-265474 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 332 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 7, 107 |
| Conread position: | 322-781 |
| Cow position: | chr19:10366355-10366810 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 326-783 |
| Cow position: | chr19:40794922-40794459 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 310 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 61, 92 |
| Conread position: | 326-820 |
| Cow position: | chr19:342544-343071 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 341 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 21, 133 |
| Conread position: | 330-809 |
| Cow position: | chr19:27036288-27035835 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 340-783 |
| Cow position: | chr19:16128472-16128940 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 251 |
| Conread position: | 350-689 |
| Cow position: | chr19:9552837-9552483 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 363-809 |
| Cow position: | chr19:55670252-55670691 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 365-692 |
| Cow position: | chr19:39096818-39097121 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 365-820 |
| Cow position: | chr19:52842903-52843365 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 367-579 |
| Cow position: | chr19:25788785-25788578 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 371-707 |
| Cow position: | chr19:19178771-19178429 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 372-820 |
| Cow position: | chr19:32140019-32139572 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 312 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 382-820 |
| Cow position: | chr19:2272729-2272295 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 385-818 |
| Cow position: | chr19:376335-375903 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 291 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 390-820 |
| Cow position: | chr19:166743-166308 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 58 |
| Conread position: | 405-828 |
| Cow position: | chr19:23400829-23400419 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 203 |
| Conread position: | 440-820 |
| Cow position: | chr19:5678357-5677978 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 132, 68 |
| Conread position: | 456-781 |
| Cow position: | chr19:1660122-1660446 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 20 |
| Conread position: | 489-766 |
| Cow position: | chr19:4301549-4301819 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 138, 74 |
| Conread position: | 496-820 |
| Cow position: | chr19:48860273-48859932 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 127 |
| Conread position: | 497-818 |
| Cow position: | chr19:1583739-1584073 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 139 |
| Conread position: | 507-817 |
| Cow position: | chr19:35107291-35106978 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 543-779 |
| Cow position: | chr19:28367482-28367715 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 549-805 |
| Cow position: | chr19:39985238-39984989 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 549-820 |
| Cow position: | chr19:40471139-40470877 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 21 |
| Conread position: | 564-734 |
| Cow position: | chr19:2586776-2586940 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 593-822 |
| Cow position: | chr19:33596173-33595944 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 599-820 |
| Cow position: | chr19:30559788-30560008 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 79, 26 |
| Conread position: | 614-820 |
| Cow position: | chr19:44032087-44032284 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 615-820 |
| Cow position: | chr19:14159546-14159340 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 624-820 |
| Cow position: | chr19:42582834-42582635 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 625-820 |
| Cow position: | chr19:43146286-43146481 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 628-821 |
| Cow position: | chr19:30453725-30453537 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 635-781 |
| Cow position: | chr19:11900348-11900494 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 12 |
Show alignments to all cow chromosomes.