Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8054M19.5 |
| Conread position: | 222-788 |
| Cow position: | chr20:27870374-27870959 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 225-820 |
| Cow position: | chr20:823944-824550 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr20:19439087-19439699 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr20:37581387-37581948 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 391 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 225-821 |
| Cow position: | chr20:30429443-30430056 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 228-676 |
| Cow position: | chr20:19355941-19356396 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 241 |
| Conread position: | 232-527 |
| Cow position: | chr20:13678867-13678566 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-731 |
| Cow position: | chr20:12569701-12570202 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-814 |
| Cow position: | chr20:18967678-18968254 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 232-820 |
| Cow position: | chr20:5536116-5536727 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr20:15293169-15293764 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 232-820 |
| Cow position: | chr20:17660563-17659961 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 232-820 |
| Cow position: | chr20:21915810-21916420 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr20:23468483-23467885 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 232-820 |
| Cow position: | chr20:23800064-23800667 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 232-820 |
| Cow position: | chr20:25849642-25849047 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr20:29949697-29950308 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 233-820 |
| Cow position: | chr20:15066650-15067234 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 238-767 |
| Cow position: | chr20:32120519-32121055 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 242-523 |
| Cow position: | chr20:14869769-14869490 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 242-556 |
| Cow position: | chr20:22210236-22210542 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 242-820 |
| Cow position: | chr20:9344156-9344729 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 245-654 |
| Cow position: | chr20:18314155-18313756 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 245-798 |
| Cow position: | chr20:13499301-13499869 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 245-818 |
| Cow position: | chr20:18323745-18323170 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 245-820 |
| Cow position: | chr20:5466226-5466792 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 144 |
| Conread position: | 248-615 |
| Cow position: | chr20:5229320-5228960 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 248-820 |
| Cow position: | chr20:30686767-30687368 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 240 |
| Conread position: | 251-807 |
| Cow position: | chr20:10854141-10853582 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 141 |
| Conread position: | 251-820 |
| Cow position: | chr20:28564385-28563793 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 253-780 |
| Cow position: | chr20:871808-871281 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 214 |
| Conread position: | 253-820 |
| Cow position: | chr20:13764101-13764679 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 254-550 |
| Cow position: | chr20:38917558-38917855 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 256-820 |
| Cow position: | chr20:28162018-28162608 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 257-507 |
| Cow position: | chr20:32349471-32349723 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 41, 169 |
| Conread position: | 263-820 |
| Cow position: | chr20:9546878-9547429 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 264-673 |
| Cow position: | chr20:9520928-9520517 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 273-828 |
| Cow position: | chr20:20753573-20753028 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 295-812 |
| Cow position: | chr20:16178521-16177973 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 297-437 |
| Cow position: | chr20:10839477-10839341 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 297-588 |
| Cow position: | chr20:27338447-27338744 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 297-722 |
| Cow position: | chr20:27896779-27896363 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 297-807 |
| Cow position: | chr20:21395168-21395684 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 175 |
| Conread position: | 298-540 |
| Cow position: | chr20:19340889-19341123 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 304-820 |
| Cow position: | chr20:24615636-24615128 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 148 |
| Conread position: | 312-620 |
| Cow position: | chr20:33182876-33182569 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 325-767 |
| Cow position: | chr20:13769144-13769576 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 305 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 325-807 |
| Cow position: | chr20:12437144-12436651 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 325-820 |
| Cow position: | chr20:3306188-3306673 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 326-820 |
| Cow position: | chr20:15096604-15096110 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 21 |
| Conread position: | 329-572 |
| Cow position: | chr20:42895297-42895052 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 336-820 |
| Cow position: | chr20:926118-925625 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 334 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 51, 118 |
| Conread position: | 345-820 |
| Cow position: | chr20:26054402-26053907 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 300 |
| Conread position: | 348-658 |
| Cow position: | chr20:22698298-22698598 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 361-728 |
| Cow position: | chr20:31609501-31609139 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 90 |
| Conread position: | 361-819 |
| Cow position: | chr20:36702707-36703165 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 362-808 |
| Cow position: | chr20:25333514-25333103 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 307 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 28, 52 |
| Conread position: | 365-731 |
| Cow position: | chr20:5937824-5937462 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 178, 5 |
| Conread position: | 385-550 |
| Cow position: | chr20:2009072-2008913 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 390-820 |
| Cow position: | chr20:41364289-41363860 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 29 |
| Conread position: | 395-814 |
| Cow position: | chr20:8972827-8972401 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 404-729 |
| Cow position: | chr20:19156392-19156072 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 413-821 |
| Cow position: | chr20:13787412-13787823 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 440-820 |
| Cow position: | chr20:10101618-10101239 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 457-829 |
| Cow position: | chr20:9119316-9118935 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 172 |
| Conread position: | 461-722 |
| Cow position: | chr20:16958220-16957971 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 481-820 |
| Cow position: | chr20:35126093-35126439 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 161 |
| Conread position: | 483-820 |
| Cow position: | chr20:21717860-21718217 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 154 |
| Conread position: | 505-806 |
| Cow position: | chr20:13793487-13793795 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 38, 123 |
| Conread position: | 511-801 |
| Cow position: | chr20:31497955-31497662 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 511-820 |
| Cow position: | chr20:20441488-20441168 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 40, 125 |
| Conread position: | 512-751 |
| Cow position: | chr20:30386615-30386365 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 40, 124 |
| Conread position: | 547-784 |
| Cow position: | chr20:7573055-7572819 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 131, 17 |
| Conread position: | 564-781 |
| Cow position: | chr20:32349729-32349946 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 565-744 |
| Cow position: | chr20:2785283-2785105 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 111, 20 |
| Conread position: | 565-820 |
| Cow position: | chr20:12041952-12042205 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 113, 60 |
| Conread position: | 565-820 |
| Cow position: | chr20:13678315-13678057 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 108, 60 |
| Conread position: | 578-820 |
| Cow position: | chr20:25899229-25899471 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 599-818 |
| Cow position: | chr20:19341389-19341607 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 619-806 |
| Cow position: | chr20:19214561-19214748 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 6 |
| Conread position: | 638-820 |
| Cow position: | chr20:8351737-8351556 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 159 |
Show alignments to all cow chromosomes.