Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8054M19.5 |
| Conread position: | 225-527 |
| Cow position: | chr23:14923186-14922878 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-588 |
| Cow position: | chr23:3707237-3707602 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 225-628 |
| Cow position: | chr23:14963933-14963536 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 251 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 225-820 |
| Cow position: | chr23:965380-964775 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr23:28218531-28219154 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 225-820 |
| Cow position: | chr23:41142117-41141507 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 227-818 |
| Cow position: | chr23:2794140-2793553 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 227-820 |
| Cow position: | chr23:22146196-22145586 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 227-820 |
| Cow position: | chr23:31648909-31648311 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 138 |
| Conread position: | 228-666 |
| Cow position: | chr23:19949476-19949022 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 125 |
| Conread position: | 228-826 |
| Cow position: | chr23:29451235-29450602 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 407 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 230-645 |
| Cow position: | chr23:11077066-11076644 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 234 |
| Conread position: | 231-819 |
| Cow position: | chr23:16498119-16497534 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 231-820 |
| Cow position: | chr23:15178194-15178783 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 231-821 |
| Cow position: | chr23:4889806-4890403 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 232-467 |
| Cow position: | chr23:1957005-1957242 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 232-561 |
| Cow position: | chr23:27400642-27400973 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-786 |
| Cow position: | chr23:2025960-2025396 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 232-820 |
| Cow position: | chr23:3879965-3879366 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr23:4818142-4818743 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr23:11779905-11780499 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 232-820 |
| Cow position: | chr23:15526687-15527300 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr23:19490664-19491271 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr23:36030257-36029664 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 232-828 |
| Cow position: | chr23:14972855-14972227 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 233-700 |
| Cow position: | chr23:29402600-29402130 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 335 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 234-692 |
| Cow position: | chr23:2342211-2342670 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 75, 11 |
| Conread position: | 237-821 |
| Cow position: | chr23:618345-617755 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 242-666 |
| Cow position: | chr23:14777830-14777402 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 56, 184 |
| Conread position: | 242-804 |
| Cow position: | chr23:13512237-13512781 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 379 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 242-818 |
| Cow position: | chr23:14262992-14263566 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 252 |
| Conread position: | 242-820 |
| Cow position: | chr23:2759018-2759618 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 245 |
| Conread position: | 245-821 |
| Cow position: | chr23:20155081-20154506 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 245-828 |
| Cow position: | chr23:30237400-30238019 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 317 |
| Conread position: | 249-559 |
| Cow position: | chr23:13510757-13511065 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 151 |
| Conread position: | 251-514 |
| Cow position: | chr23:19451285-19451550 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 50, 148 |
| Conread position: | 252-788 |
| Cow position: | chr23:4513606-4514171 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 238 |
| Conread position: | 258-670 |
| Cow position: | chr23:2576558-2576956 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 282 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 42, 92 |
| Conread position: | 259-462 |
| Cow position: | chr23:25682809-25682602 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 261-682 |
| Cow position: | chr23:2718459-2718895 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 106 |
| Conread position: | 262-820 |
| Cow position: | chr23:11714722-11714146 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 224 |
| Conread position: | 262-820 |
| Cow position: | chr23:15876420-15875848 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 203 |
| Conread position: | 262-820 |
| Cow position: | chr23:16054927-16055491 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 263-781 |
| Cow position: | chr23:21822129-21821638 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 343 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 37, 110 |
| Conread position: | 297-686 |
| Cow position: | chr23:21243550-21243151 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 297-743 |
| Cow position: | chr23:16613987-16613545 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 20 |
| Conread position: | 297-745 |
| Cow position: | chr23:38691677-38692136 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 164 |
| Conread position: | 298-821 |
| Cow position: | chr23:1022771-1022238 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 299-820 |
| Cow position: | chr23:5873386-5872852 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 323-816 |
| Cow position: | chr23:2440043-2439573 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 65 |
| Conread position: | 325-812 |
| Cow position: | chr23:948615-948111 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 67, 148 |
| Conread position: | 325-820 |
| Cow position: | chr23:7314123-7314630 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 155 |
| Conread position: | 329-818 |
| Cow position: | chr23:1012577-1012104 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 340-761 |
| Cow position: | chr23:7044944-7044538 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 340-820 |
| Cow position: | chr23:30563653-30564121 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 347-767 |
| Cow position: | chr23:8287197-8287607 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 289 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 360-820 |
| Cow position: | chr23:23172029-23172496 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 376-527 |
| Cow position: | chr23:22942720-22942575 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 376-788 |
| Cow position: | chr23:22167916-22168328 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 76 |
| Conread position: | 376-820 |
| Cow position: | chr23:4639320-4638878 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 25 |
| Conread position: | 376-820 |
| Cow position: | chr23:15218604-15218168 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 379-603 |
| Cow position: | chr23:32884101-32883879 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 170, 90 |
| Conread position: | 388-818 |
| Cow position: | chr23:17878476-17878041 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 13 |
| Conread position: | 391-692 |
| Cow position: | chr23:38579005-38579288 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 246, 61 |
| Conread position: | 406-818 |
| Cow position: | chr23:15660457-15660060 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 458-818 |
| Cow position: | chr23:26838170-26838547 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 29 |
| Conread position: | 459-820 |
| Cow position: | chr23:1957520-1957880 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 459-820 |
| Cow position: | chr23:31164157-31164521 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 492-820 |
| Cow position: | chr23:32351381-32351042 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 144 |
| Conread position: | 497-820 |
| Cow position: | chr23:28304301-28304635 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 139 |
| Conread position: | 507-723 |
| Cow position: | chr23:6220548-6220769 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 546-820 |
| Cow position: | chr23:14961505-14961232 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 130, 26 |
| Conread position: | 547-752 |
| Cow position: | chr23:4435100-4435305 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 131, 25 |
| Conread position: | 556-828 |
| Cow position: | chr23:35274103-35274372 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 125, 13 |
| Conread position: | 564-820 |
| Cow position: | chr23:608179-608432 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 114, 61 |
| Conread position: | 612-809 |
| Cow position: | chr23:23283037-23283236 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 626-820 |
| Cow position: | chr23:29478737-29478925 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 635-808 |
| Cow position: | chr23:24108282-24108459 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 639-820 |
| Cow position: | chr23:26158903-26158717 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 641-820 |
| Cow position: | chr23:11074938-11074755 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 648-820 |
| Cow position: | chr23:11931709-11931880 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.