Cow genome map

Conread name: Ss1.1-Pig4-TMW8054M19.5

Conread position: 224-795
Cow position: chr24:6130024-6130593 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 21

Conread position: 225-590
Cow position: chr24:29305115-29304747 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 261
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 73, 21

Conread position: 225-645
Cow position: chr24:9187544-9187108 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 225-692
Cow position: chr24:11152039-11151555 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 225-717
Cow position: chr24:6435681-6436190 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 225-767
Cow position: chr24:5992027-5991469 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 20

Conread position: 225-812
Cow position: chr24:44018706-44019310 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 225-819
Cow position: chr24:23504664-23504051 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 225-820
Cow position: chr24:6023907-6023279 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 21

Conread position: 225-820
Cow position: chr24:7062740-7063349 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 227-692
Cow position: chr24:6142288-6142751 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 314
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 71, 20

Conread position: 227-821
Cow position: chr24:33934589-33935198 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 18

Conread position: 228-815
Cow position: chr24:19702703-19703291 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 31

Conread position: 228-818
Cow position: chr24:17321914-17322483 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 94

Conread position: 228-820
Cow position: chr24:9090852-9090251 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 95

Conread position: 231-820
Cow position: chr24:147404-146800 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 14

Conread position: 232-749
Cow position: chr24:6407243-6407771 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 13

Conread position: 232-809
Cow position: chr24:6337594-6338180 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 13

Conread position: 232-819
Cow position: chr24:12087414-12088008 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 13

Conread position: 232-819
Cow position: chr24:16561120-16560502 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 258

Conread position: 232-820
Cow position: chr24:13233463-13234057 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 13

Conread position: 232-820
Cow position: chr24:19834602-19835216 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 13

Conread position: 232-820
Cow position: chr24:29188498-29189095 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 13

Conread position: 232-828
Cow position: chr24:12150106-12149472 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 13

Conread position: 234-817
Cow position: chr24:38638744-38639335 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 25

Conread position: 235-820
Cow position: chr24:6353352-6353944 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 99

Conread position: 237-820
Cow position: chr24:17409689-17410268 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 88

Conread position: 238-820
Cow position: chr24:35869349-35868780 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 7

Conread position: 242-550
Cow position: chr24:1450643-1450934 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 105, 49

Conread position: 242-643
Cow position: chr24:29408489-29408074 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 270
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 184

Conread position: 242-646
Cow position: chr24:35840848-35840455 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 67

Conread position: 242-736
Cow position: chr24:12699603-12699098 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 83

Conread position: 242-820
Cow position: chr24:7089753-7089191 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 83

Conread position: 242-820
Cow position: chr24:13044427-13043818 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 257

Conread position: 242-820
Cow position: chr24:37199675-37199108 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 27

Conread position: 245-635
Cow position: chr24:12163162-12163558 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 276
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 77

Conread position: 248-820
Cow position: chr24:4414313-4413746 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 123

Conread position: 248-820
Cow position: chr24:38585899-38585326 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 77

Conread position: 248-822
Cow position: chr24:6659276-6658683 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 208

Conread position: 251-522
Cow position: chr24:19640904-19641185 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 49, 243

Conread position: 251-820
Cow position: chr24:13189410-13189973 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 71

Conread position: 254-761
Cow position: chr24:17370746-17370273 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 334
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 319, 48

Conread position: 255-783
Cow position: chr24:14871093-14870561 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 71

Conread position: 255-820
Cow position: chr24:12238519-12239099 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 62

Conread position: 261-683
Cow position: chr24:14389300-14388872 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 301
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 38, 61

Conread position: 261-820
Cow position: chr24:14383400-14382820 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 216

Conread position: 297-638
Cow position: chr24:25437569-25437905 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 242
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 33, 97

Conread position: 297-724
Cow position: chr24:14305103-14305521 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 296
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 39, 141

Conread position: 297-820
Cow position: chr24:9545329-9545865 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 178

Conread position: 297-828
Cow position: chr24:13179741-13179204 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 23

Conread position: 298-692
Cow position: chr24:16097802-16098204 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 277
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 47, 22

Conread position: 299-549
Cow position: chr24:10222893-10222646 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 28, 18

Conread position: 299-820
Cow position: chr24:36298713-36299219 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 129

Conread position: 324-475
Cow position: chr24:11938616-11938463 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 324-633
Cow position: chr24:16875904-16875584 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 136

Conread position: 324-795
Cow position: chr24:17279086-17278601 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 311
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 152

Conread position: 324-818
Cow position: chr24:40470063-40469563 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 341
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 16, 44

Conread position: 324-819
Cow position: chr24:6344245-6344726 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 325
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 17, 44

Conread position: 324-821
Cow position: chr24:29352539-29352047 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 328
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 87

Conread position: 325-820
Cow position: chr24:6324048-6323541 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 129

Conread position: 325-828
Cow position: chr24:12205028-12204527 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 55

Conread position: 334-819
Cow position: chr24:32847334-32847832 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 334
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 35, 41

Conread position: 340-744
Cow position: chr24:38289441-38289044 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 79

Conread position: 348-820
Cow position: chr24:6668406-6667949 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 286
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 160, 66

Conread position: 360-781
Cow position: chr24:8606156-8606591 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 92

Conread position: 360-788
Cow position: chr24:310206-310645 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 119

Conread position: 365-818
Cow position: chr24:12334382-12333931 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 32

Conread position: 369-814
Cow position: chr24:42584400-42583967 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 314
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 132, 71

Conread position: 373-781
Cow position: chr24:9435585-9435179 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 274
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 10, 98

Conread position: 373-820
Cow position: chr24:22972415-22972874 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 376-821
Cow position: chr24:13512413-13511983 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 287
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 21

Conread position: 377-640
Cow position: chr24:14277854-14277600 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 180, 37

Conread position: 386-623
Cow position: chr24:40468423-40468660 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 164, 8

Conread position: 401-692
Cow position: chr24:16083397-16083099 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 221
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 151, 74

Conread position: 406-820
Cow position: chr24:28032011-28031618 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 267
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 151, 63

Conread position: 414-820
Cow position: chr24:14755395-14755808 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 61

Conread position: 435-820
Cow position: chr24:5776988-5776592 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 269
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 15, 32

Conread position: 436-767
Cow position: chr24:6676004-6676339 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 229
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 69, 33

Conread position: 461-819
Cow position: chr24:6036431-6036797 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 28

Conread position: 469-776
Cow position: chr24:36723270-36723593 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 21, 164

Conread position: 471-814
Cow position: chr24:12569480-12569821 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 246
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 78, 9

Conread position: 471-828
Cow position: chr24:12108116-12107748 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 175
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 18

Conread position: 496-821
Cow position: chr24:41003961-41004296 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 139

Conread position: 498-820
Cow position: chr24:6963274-6962941 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 138

Conread position: 499-820
Cow position: chr24:36558073-36557761 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 58, 110

Conread position: 510-819
Cow position: chr24:6060920-6061217 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 17, 10

Conread position: 516-821
Cow position: chr24:8150822-8150510 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 94, 45

Conread position: 542-818
Cow position: chr24:19469076-19468801 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 35, 73

Conread position: 546-820
Cow position: chr24:20286376-20286103 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 132, 18

Conread position: 564-784
Cow position: chr24:17957992-17957771 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 114, 19

Conread position: 609-820
Cow position: chr24:6272994-6272782 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 611-805
Cow position: chr24:35840293-35840093 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 19

Conread position: 614-820
Cow position: chr24:1493165-1493366 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 15

Conread position: 614-821
Cow position: chr24:13086879-13086673 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 114, 11

Conread position: 623-828
Cow position: chr24:12163843-12164049 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 139
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 168

Conread position: 625-819
Cow position: chr24:25184820-25185013 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 165, 0

Conread position: 636-820
Cow position: chr24:25438226-25438411 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 677-820
Cow position: chr24:19183831-19183974 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 100, 11

Show alignments to all cow chromosomes.