Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8054M19.5 |
| Conread position: | 225-692 |
| Cow position: | chr25:18192601-18192116 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-800 |
| Cow position: | chr25:11041527-11042099 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 225-820 |
| Cow position: | chr25:13693508-13692896 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr25:17588396-17587796 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 227-550 |
| Cow position: | chr25:24659050-24658722 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 227-820 |
| Cow position: | chr25:11931616-11931012 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 227-822 |
| Cow position: | chr25:17655602-17656175 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 95 |
| Conread position: | 227-828 |
| Cow position: | chr25:18177861-18178472 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 230-820 |
| Cow position: | chr25:34345838-34345233 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 231-795 |
| Cow position: | chr25:18251746-18251190 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 231-798 |
| Cow position: | chr25:18305317-18305888 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 232-788 |
| Cow position: | chr25:22148707-22149281 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 232-820 |
| Cow position: | chr25:18888574-18887972 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr25:27021418-27020826 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 232-821 |
| Cow position: | chr25:20630796-20631397 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 235-801 |
| Cow position: | chr25:18273598-18273032 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 238-829 |
| Cow position: | chr25:18486377-18485786 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 242-538 |
| Cow position: | chr25:32902093-32902394 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 219 |
| Conread position: | 242-692 |
| Cow position: | chr25:20774194-20773727 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 245-818 |
| Cow position: | chr25:13782214-13782817 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 245-820 |
| Cow position: | chr25:12941493-12940901 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 242 |
| Conread position: | 245-820 |
| Cow position: | chr25:25507882-25508479 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 166 |
| Conread position: | 245-821 |
| Cow position: | chr25:14957270-14956716 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 403 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 247-820 |
| Cow position: | chr25:19921714-19922312 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 8 |
| Conread position: | 248-793 |
| Cow position: | chr25:17559378-17558820 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 105 |
| Conread position: | 253-677 |
| Cow position: | chr25:13454394-13453953 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 135 |
| Conread position: | 255-820 |
| Cow position: | chr25:13062520-13061938 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 196 |
| Conread position: | 262-740 |
| Cow position: | chr25:30266690-30267182 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 262-808 |
| Cow position: | chr25:24216273-24215737 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 364 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 263-820 |
| Cow position: | chr25:36636483-36635937 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 297-723 |
| Cow position: | chr25:21902274-21902710 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 20 |
| Conread position: | 298-820 |
| Cow position: | chr25:27523359-27522854 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 308-715 |
| Cow position: | chr25:9392883-9393301 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 325-820 |
| Cow position: | chr25:4533237-4532738 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 350 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 23, 93 |
| Conread position: | 325-820 |
| Cow position: | chr25:12757865-12757346 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 320 |
| Conread position: | 326-735 |
| Cow position: | chr25:25543185-25543594 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 15, 133 |
| Conread position: | 326-807 |
| Cow position: | chr25:11830841-11830353 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 326 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 340-820 |
| Cow position: | chr25:23847913-23847465 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 268, 52 |
| Conread position: | 367-820 |
| Cow position: | chr25:19339289-19338828 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 62 |
| Conread position: | 373-723 |
| Cow position: | chr25:13794112-13793757 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 374-821 |
| Cow position: | chr25:30149391-30148955 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 11 |
| Conread position: | 376-746 |
| Cow position: | chr25:13999084-13999450 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 385-821 |
| Cow position: | chr25:19998015-19998443 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 283 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 7, 50 |
| Conread position: | 394-820 |
| Cow position: | chr25:20346642-20346211 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 36 |
| Conread position: | 415-820 |
| Cow position: | chr25:18450703-18451107 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 129, 52 |
| Conread position: | 425-623 |
| Cow position: | chr25:33614217-33614422 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 50 |
| Conread position: | 444-828 |
| Cow position: | chr25:13772141-13771766 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 30 |
| Conread position: | 456-820 |
| Cow position: | chr25:16925004-16924631 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 472-652 |
| Cow position: | chr25:32153006-32153182 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 473-816 |
| Cow position: | chr25:10944171-10943819 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 68, 14 |
| Conread position: | 488-820 |
| Cow position: | chr25:32580951-32581294 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 148 |
| Conread position: | 501-746 |
| Cow position: | chr25:21563118-21562872 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 504-820 |
| Cow position: | chr25:19427889-19427582 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 172, 125 |
| Conread position: | 504-820 |
| Cow position: | chr25:35588882-35588564 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 538-819 |
| Cow position: | chr25:20097902-20098185 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 555-815 |
| Cow position: | chr25:2368504-2368766 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 599-821 |
| Cow position: | chr25:33260775-33260996 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 607-821 |
| Cow position: | chr25:19018623-19018408 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 619-819 |
| Cow position: | chr25:29358052-29358252 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 619-820 |
| Cow position: | chr25:35627877-35627676 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 59, 6 |
| Conread position: | 622-820 |
| Cow position: | chr25:25288547-25288746 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 645-808 |
| Cow position: | chr25:40140099-40139935 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.