Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8054M19.5 |
| Conread position: | 225-689 |
| Cow position: | chr26:8920011-8920492 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr26:3029668-3029056 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 225-820 |
| Cow position: | chr26:18853399-18853995 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 231-753 |
| Cow position: | chr26:14507165-14506605 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 232-781 |
| Cow position: | chr26:17325254-17325822 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 232-808 |
| Cow position: | chr26:19350335-19349740 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr26:6848257-6847676 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 232-820 |
| Cow position: | chr26:14895127-14895728 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-828 |
| Cow position: | chr26:34012858-34013448 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 233-483 |
| Cow position: | chr26:1087258-1086997 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 64, 247 |
| Conread position: | 235-812 |
| Cow position: | chr26:11287455-11288030 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 374 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 235-820 |
| Cow position: | chr26:6805875-6805285 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 236-821 |
| Cow position: | chr26:30783948-30784529 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 237-557 |
| Cow position: | chr26:12666681-12666987 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 139 |
| Conread position: | 242-490 |
| Cow position: | chr26:8086363-8086609 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 60 |
| Conread position: | 242-656 |
| Cow position: | chr26:13195246-13194840 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 242-820 |
| Cow position: | chr26:12587366-12586771 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 242-820 |
| Cow position: | chr26:30588173-30587589 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 143 |
| Conread position: | 245-812 |
| Cow position: | chr26:5676305-5676906 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 245-818 |
| Cow position: | chr26:2199830-2200409 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 245-820 |
| Cow position: | chr26:4328248-4327664 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 248-643 |
| Cow position: | chr26:9561591-9561178 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 236 |
| Conread position: | 248-820 |
| Cow position: | chr26:8871030-8871616 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 248-820 |
| Cow position: | chr26:17395711-17395133 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 214 |
| Conread position: | 251-463 |
| Cow position: | chr26:5218983-5218766 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 251-729 |
| Cow position: | chr26:8646049-8646520 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 259-820 |
| Cow position: | chr26:21825474-21824901 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 262-828 |
| Cow position: | chr26:4603940-4603374 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 297-820 |
| Cow position: | chr26:35336929-35336408 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 299-698 |
| Cow position: | chr26:1627245-1627641 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 324-767 |
| Cow position: | chr26:19205158-19205601 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 226, 27 |
| Conread position: | 328-814 |
| Cow position: | chr26:25035764-25036248 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 129 |
| Conread position: | 332-820 |
| Cow position: | chr26:8282529-8282033 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 339-800 |
| Cow position: | chr26:21419622-21419175 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 340-654 |
| Cow position: | chr26:1086939-1086616 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 48, 133 |
| Conread position: | 348-820 |
| Cow position: | chr26:26271021-26271480 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 360-788 |
| Cow position: | chr26:35369248-35369687 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 360-815 |
| Cow position: | chr26:28373917-28373450 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 365-660 |
| Cow position: | chr26:31840680-31840980 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 373-744 |
| Cow position: | chr26:30083802-30084189 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 98 |
| Conread position: | 373-820 |
| Cow position: | chr26:11036743-11037185 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 376-820 |
| Cow position: | chr26:16478658-16479104 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 96 |
| Conread position: | 379-820 |
| Cow position: | chr26:16856768-16856324 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 384-732 |
| Cow position: | chr26:12827287-12827636 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 191, 85 |
| Conread position: | 401-746 |
| Cow position: | chr26:35252726-35252383 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 413-820 |
| Cow position: | chr26:33148506-33148092 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 62 |
| Conread position: | 414-744 |
| Cow position: | chr26:1656674-1656355 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 186, 55 |
| Conread position: | 415-630 |
| Cow position: | chr26:9843326-9843103 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 144, 54 |
| Conread position: | 421-820 |
| Cow position: | chr26:2350827-2350417 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 54 |
| Conread position: | 456-749 |
| Cow position: | chr26:8911392-8911097 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 458-695 |
| Cow position: | chr26:35680851-35681082 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 465-820 |
| Cow position: | chr26:8216854-8216507 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 466-818 |
| Cow position: | chr26:21708983-21708623 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 469-820 |
| Cow position: | chr26:9113304-9113661 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 470-821 |
| Cow position: | chr26:20265340-20265684 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 473-731 |
| Cow position: | chr26:34029404-34029659 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 546-809 |
| Cow position: | chr26:8086609-8086872 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 556-820 |
| Cow position: | chr26:21007656-21007926 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 595-766 |
| Cow position: | chr26:16725695-16725867 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 81, 30 |
| Conread position: | 624-820 |
| Cow position: | chr26:9842822-9842628 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 624-820 |
| Cow position: | chr26:17322221-17322427 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 677-828 |
| Cow position: | chr26:27989628-27989477 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 706-820 |
| Cow position: | chr26:13773224-13773110 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.