Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8054M19.5 |
| Conread position: | 225-820 |
| Cow position: | chr27:1677467-1676848 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 225-829 |
| Cow position: | chr27:27664116-27664729 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 227-820 |
| Cow position: | chr27:8735302-8735895 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 378 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 230-820 |
| Cow position: | chr27:26554278-26553720 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 232-481 |
| Cow position: | chr27:6160877-6160612 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 232-728 |
| Cow position: | chr27:19259819-19260331 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 232-820 |
| Cow position: | chr27:1210478-1211081 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 232-820 |
| Cow position: | chr27:3234413-3233797 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 232-820 |
| Cow position: | chr27:5912039-5912640 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr27:9992077-9991491 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr27:13898444-13899036 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr27:15636224-15635618 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr27:25803570-25802969 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 232-820 |
| Cow position: | chr27:26326197-26326786 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 233-627 |
| Cow position: | chr27:16425852-16426250 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 234-561 |
| Cow position: | chr27:25331964-25331641 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 241-586 |
| Cow position: | chr27:11486444-11486782 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 256 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 60, 10 |
| Conread position: | 241-820 |
| Cow position: | chr27:25084709-25085285 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 242-820 |
| Cow position: | chr27:15274932-15274345 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 242-820 |
| Cow position: | chr27:16033274-16032678 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 245-729 |
| Cow position: | chr27:17817955-17818456 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 248-676 |
| Cow position: | chr27:1575735-1576178 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 228 |
| Conread position: | 256-808 |
| Cow position: | chr27:9330877-9331447 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 132 |
| Conread position: | 256-820 |
| Cow position: | chr27:4980515-4981097 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 206 |
| Conread position: | 261-740 |
| Cow position: | chr27:7419880-7420370 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 19 |
| Conread position: | 262-686 |
| Cow position: | chr27:23292428-23292845 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 35, 176 |
| Conread position: | 264-527 |
| Cow position: | chr27:16552021-16552287 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 97 |
| Conread position: | 297-820 |
| Cow position: | chr27:25058106-25058626 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 297-820 |
| Cow position: | chr27:28079605-28080133 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 183 |
| Conread position: | 298-820 |
| Cow position: | chr27:167717-167203 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 299-744 |
| Cow position: | chr27:22150140-22150590 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 318-695 |
| Cow position: | chr27:8589937-8590300 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 70 |
| Conread position: | 325-818 |
| Cow position: | chr27:23741748-23741247 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 328 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 326-767 |
| Cow position: | chr27:2622128-2622566 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 63 |
| Conread position: | 329-820 |
| Cow position: | chr27:798345-797842 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 151 |
| Conread position: | 340-745 |
| Cow position: | chr27:3104974-3105386 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 81 |
| Conread position: | 367-820 |
| Cow position: | chr27:12748303-12748762 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 34 |
| Conread position: | 369-821 |
| Cow position: | chr27:29464128-29464585 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 370-767 |
| Cow position: | chr27:16967251-16966864 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 199, 25 |
| Conread position: | 374-640 |
| Cow position: | chr27:23904724-23904454 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 184, 21 |
| Conread position: | 374-767 |
| Cow position: | chr27:30911502-30911901 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 5, 96 |
| Conread position: | 374-820 |
| Cow position: | chr27:1848084-1847659 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 375-820 |
| Cow position: | chr27:29855983-29856425 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 317 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 148, 20 |
| Conread position: | 376-821 |
| Cow position: | chr27:19135113-19135564 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 380-820 |
| Cow position: | chr27:28892900-28893333 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 30 |
| Conread position: | 382-807 |
| Cow position: | chr27:22673330-22673735 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 393-820 |
| Cow position: | chr27:19524845-19525271 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 82 |
| Conread position: | 417-820 |
| Cow position: | chr27:8199123-8199533 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 58 |
| Conread position: | 434-820 |
| Cow position: | chr27:26032535-26032148 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 435-786 |
| Cow position: | chr27:21286214-21285859 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 466-820 |
| Cow position: | chr27:27194999-27194632 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 24, 173 |
| Conread position: | 469-814 |
| Cow position: | chr27:6160507-6160149 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 168 |
| Conread position: | 471-819 |
| Cow position: | chr27:29056527-29056884 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 501-818 |
| Cow position: | chr27:25035016-25034700 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 37, 132 |
| Conread position: | 545-820 |
| Cow position: | chr27:2377978-2378250 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 563-757 |
| Cow position: | chr27:11486728-11486917 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 564-767 |
| Cow position: | chr27:1900569-1900366 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 114, 61 |
| Conread position: | 565-758 |
| Cow position: | chr27:16264575-16264383 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 57 |
| Conread position: | 565-827 |
| Cow position: | chr27:10327258-10326997 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 624-821 |
| Cow position: | chr27:25872103-25872300 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 130, 40 |
| Conread position: | 626-820 |
| Cow position: | chr27:15373367-15373569 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.