Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056I09.5 |
| Conread position: | 344-1003 |
| Cow position: | chr14:3061354-3060693 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 87 |
| Conread position: | 350-993 |
| Cow position: | chr14:680449-681093 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 388 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 28, 244 |
| Conread position: | 356-924 |
| Cow position: | chr14:433790-434359 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 357-875 |
| Cow position: | chr14:3061172-3060653 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 336 |
| Conread position: | 376-885 |
| Cow position: | chr14:680728-681237 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 376-888 |
| Cow position: | chr14:680560-681072 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 217 |
| Conread position: | 376-1003 |
| Cow position: | chr14:3061656-3061029 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 124 |
| Conread position: | 376-1005 |
| Cow position: | chr14:3061740-3061111 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 272 |
| Conread position: | 379-1007 |
| Cow position: | chr14:3061401-3060773 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 198 |
| Conread position: | 383-657 |
| Cow position: | chr14:663395-663121 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 383-715 |
| Cow position: | chr14:3079998-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 202, 210 |
| Conread position: | 383-799 |
| Cow position: | chr14:3155417-3155833 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 121 |
| Conread position: | 383-993 |
| Cow position: | chr14:3080334-3079724 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 211 |
| Conread position: | 383-994 |
| Cow position: | chr14:3061481-3060870 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 387-886 |
| Cow position: | chr14:433906-434405 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 387-888 |
| Cow position: | chr14:680655-681156 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 399 |
| Conread position: | 387-904 |
| Cow position: | chr14:3080162-3079642 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 199, 207 |
| Conread position: | 387-924 |
| Cow position: | chr14:3061225-3060688 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 200 |
| Conread position: | 387-993 |
| Cow position: | chr14:3080666-3080060 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 398 |
| Conread position: | 387-993 |
| Cow position: | chr14:3080750-3080144 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-1007 |
| Cow position: | chr14:433739-434358 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 387-1008 |
| Cow position: | chr14:447601-448222 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 210 |
| Conread position: | 388-994 |
| Cow position: | chr14:3080581-3079975 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 391-719 |
| Cow position: | chr14:3155509-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 136, 146 |
| Conread position: | 391-967 |
| Cow position: | chr14:3080242-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 348 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 119, 109 |
| Conread position: | 391-1007 |
| Cow position: | chr14:3080410-3079794 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 368 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 195, 215 |
| Conread position: | 391-1007 |
| Cow position: | chr14:3080830-3080214 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 375 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 398-993 |
| Cow position: | chr14:3128083-3127488 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 341 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 428, 435 |
| Conread position: | 398-1007 |
| Cow position: | chr14:3080487-3079878 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 288 |
| Conread position: | 401-1007 |
| Cow position: | chr14:25894972-25895578 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 196 |
| Conread position: | 404-1003 |
| Cow position: | chr14:3061796-3061197 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 410-635 |
| Cow position: | chr14:3155612-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 431-888 |
| Cow position: | chr14:3128134-3127677 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 286 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 155, 166 |
| Conread position: | 432-1003 |
| Cow position: | chr14:447562-448133 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 165 |
| Conread position: | 437-873 |
| Cow position: | chr14:447819-448255 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 273 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 448-741 |
| Cow position: | chr14:663414-663121 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 50, 46 |
| Conread position: | 449-835 |
| Cow position: | chr14:663496-663111 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 451-1007 |
| Cow position: | chr14:3080938-3080382 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 341 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 452-706 |
| Cow position: | chr14:3127525-3127271 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 452-936 |
| Cow position: | chr14:447750-448234 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 452-993 |
| Cow position: | chr14:680468-681009 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 141 |
| Conread position: | 452-1005 |
| Cow position: | chr14:3127861-3127308 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 391, 379 |
| Conread position: | 463-1007 |
| Cow position: | chr14:447509-448053 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 122, 130 |
| Conread position: | 481-1003 |
| Cow position: | chr14:680245-680767 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 319 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 47 |
| Conread position: | 520-975 |
| Cow position: | chr14:3128129-3127674 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 89, 82 |
| Conread position: | 533-909 |
| Cow position: | chr14:663496-663121 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 88, 22 |
| Conread position: | 533-960 |
| Cow position: | chr14:3156056-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 124, 139 |
| Conread position: | 536-887 |
| Cow position: | chr14:3155486-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 536-1007 |
| Cow position: | chr14:680384-680855 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 293 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 542-967 |
| Cow position: | chr14:3155408-3155833 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 114, 130 |
| Conread position: | 542-1006 |
| Cow position: | chr14:3061742-3061278 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 620-1007 |
| Cow position: | chr14:3156059-3156446 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 222, 217 |
| Conread position: | 689-1007 |
| Cow position: | chr14:3155471-3155789 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 692-1003 |
| Cow position: | chr14:663422-663111 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 142, 136 |
| Conread position: | 746-1003 |
| Cow position: | chr14:3128155-3127898 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 761-1003 |
| Cow position: | chr14:663437-663195 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 73, 67 |
Show alignments to all cow chromosomes.