Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056I09.5 |
| Conread position: | 350-876 |
| Cow position: | chr18:55497563-55497036 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 330 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 30, 246 |
| Conread position: | 354-962 |
| Cow position: | chr18:47846622-47846013 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 386 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 355-888 |
| Cow position: | chr18:56329454-56328917 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 333 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 357-888 |
| Cow position: | chr18:56391368-56390833 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 366-914 |
| Cow position: | chr18:44817733-44818286 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 355 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 368-1003 |
| Cow position: | chr18:22844037-22843392 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 387 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 369-1007 |
| Cow position: | chr18:56391604-56390966 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 75 |
| Conread position: | 374-991 |
| Cow position: | chr18:22844368-22843749 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 380 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 12, 16 |
| Conread position: | 376-1007 |
| Cow position: | chr18:56391900-56391302 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 379-612 |
| Cow position: | chr18:44818643-44818876 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 138, 124 |
| Conread position: | 379-993 |
| Cow position: | chr18:56329594-56328980 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 372 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 214, 206 |
| Conread position: | 387-863 |
| Cow position: | chr18:56329334-56328858 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 190, 194 |
| Conread position: | 387-972 |
| Cow position: | chr18:52012178-52011593 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 350 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 123, 116 |
| Conread position: | 387-993 |
| Cow position: | chr18:52012262-52011656 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 360 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-1007 |
| Cow position: | chr18:56329670-56329050 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-1007 |
| Cow position: | chr18:56329838-56329218 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 388-888 |
| Cow position: | chr18:53635526-53635027 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 184, 205 |
| Conread position: | 391-729 |
| Cow position: | chr18:22843674-22843330 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 88 |
| Conread position: | 391-972 |
| Cow position: | chr18:56391414-56390833 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 205 |
| Conread position: | 392-993 |
| Cow position: | chr18:56330085-56329484 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 294 |
| Conread position: | 392-1007 |
| Cow position: | chr18:56330169-56329554 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 372 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 118, 108 |
| Conread position: | 392-1007 |
| Cow position: | chr18:56391497-56390882 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 187 |
| Conread position: | 398-993 |
| Cow position: | chr18:52012335-52011740 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 353 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 108, 117 |
| Conread position: | 398-1007 |
| Cow position: | chr18:56329743-56329134 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 181 |
| Conread position: | 401-907 |
| Cow position: | chr18:54668836-54668327 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 319 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 63, 55 |
| Conread position: | 401-972 |
| Cow position: | chr18:56316496-56317067 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 409-971 |
| Cow position: | chr18:22843827-22843255 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 357 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 423-979 |
| Cow position: | chr18:55497573-55497014 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 425-909 |
| Cow position: | chr18:50281810-50282293 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 172, 5 |
| Conread position: | 426-993 |
| Cow position: | chr18:56316438-56317004 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 352 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 84, 5 |
| Conread position: | 426-1005 |
| Cow position: | chr18:56329967-56329388 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 434-1007 |
| Cow position: | chr18:56329874-56329302 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 6 |
| Conread position: | 437-888 |
| Cow position: | chr18:53610236-53609785 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 170, 159 |
| Conread position: | 438-910 |
| Cow position: | chr18:47846705-47846233 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 98 |
| Conread position: | 443-1003 |
| Cow position: | chr18:22844384-22843821 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 333 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 215, 222 |
| Conread position: | 449-1005 |
| Cow position: | chr18:56316376-56316932 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 338 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 121, 116 |
| Conread position: | 452-706 |
| Cow position: | chr18:56391908-56391654 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 452-791 |
| Cow position: | chr18:56267466-56267127 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 452-888 |
| Cow position: | chr18:49032632-49032196 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 373, 381 |
| Conread position: | 452-888 |
| Cow position: | chr18:49033220-49032784 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 452-888 |
| Cow position: | chr18:50281752-50282188 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 452-888 |
| Cow position: | chr18:53635546-53635110 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 155, 144 |
| Conread position: | 452-991 |
| Cow position: | chr18:56316211-56316750 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 316 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 280, 286 |
| Conread position: | 452-993 |
| Cow position: | chr18:49032968-49032427 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 205, 213 |
| Conread position: | 452-993 |
| Cow position: | chr18:52012365-52011824 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 452-1003 |
| Cow position: | chr18:55497628-55497077 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 142 |
| Conread position: | 452-1003 |
| Cow position: | chr18:56316295-56316846 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 336 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 196, 202 |
| Conread position: | 464-972 |
| Cow position: | chr18:54668857-54668349 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 465-981 |
| Cow position: | chr18:47846594-47846078 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 326 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 39, 44 |
| Conread position: | 476-993 |
| Cow position: | chr18:56316067-56316584 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 212, 203 |
| Conread position: | 524-994 |
| Cow position: | chr18:47846703-47846233 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 169 |
| Conread position: | 535-1006 |
| Cow position: | chr18:42724595-42724124 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 536-847 |
| Cow position: | chr18:56267466-56267155 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 536-847 |
| Cow position: | chr18:56391908-56391602 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 536-993 |
| Cow position: | chr18:56128199-56128656 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 368, 386 |
| Conread position: | 536-1003 |
| Cow position: | chr18:52012448-52011982 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 227, 69 |
| Conread position: | 536-1005 |
| Cow position: | chr18:52012365-52011896 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 220, 233 |
| Conread position: | 536-1007 |
| Cow position: | chr18:55497628-55497157 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 290, 314 |
| Conread position: | 553-1006 |
| Cow position: | chr18:55497695-55497242 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 357, 365 |
| Conread position: | 557-833 |
| Cow position: | chr18:44818569-44818845 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 102, 114 |
| Conread position: | 568-1003 |
| Cow position: | chr18:54668837-54668402 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 619-959 |
| Cow position: | chr18:56267467-56267127 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 620-1007 |
| Cow position: | chr18:42724594-42724207 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 626-835 |
| Cow position: | chr18:54687742-54687951 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 61 |
| Conread position: | 644-1006 |
| Cow position: | chr18:54668845-54668483 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 690-1003 |
| Cow position: | chr18:47846705-47846392 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 691-945 |
| Cow position: | chr18:44818619-44818873 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 691-957 |
| Cow position: | chr18:54664067-54664332 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 691-1005 |
| Cow position: | chr18:56391921-56391611 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 156 |
| Conread position: | 692-1004 |
| Cow position: | chr18:44817891-44818203 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 704-993 |
| Cow position: | chr18:56267466-56267177 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 766-1007 |
| Cow position: | chr18:56391930-56391689 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 776-1006 |
| Cow position: | chr18:44818620-44818850 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 135, 145 |
Show alignments to all cow chromosomes.