Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056I09.5 |
| Conread position: | 3-342 |
| Cow position: | chr25:24392155-24391820 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 339-1008 |
| Cow position: | chr25:24385454-24384785 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 632 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 349-970 |
| Cow position: | chr25:3636588-3635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 354-835 |
| Cow position: | chr25:24385191-24384706 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 152 |
| Conread position: | 354-937 |
| Cow position: | chr25:33530205-33530789 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 79 |
| Conread position: | 356-1007 |
| Cow position: | chr25:25652583-25653238 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 336 |
| Conread position: | 367-835 |
| Cow position: | chr25:33529003-33529472 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 237 |
| Conread position: | 369-874 |
| Cow position: | chr25:3675904-3676405 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 379-545 |
| Cow position: | chr25:33530651-33530817 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 379-710 |
| Cow position: | chr25:33506834-33507166 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 289, 310 |
| Conread position: | 379-738 |
| Cow position: | chr25:22940514-22940155 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 146, 129 |
| Conread position: | 379-748 |
| Cow position: | chr25:4657379-4657005 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 379-751 |
| Cow position: | chr25:25652946-25653318 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 214 |
| Conread position: | 379-1003 |
| Cow position: | chr25:33530147-33530771 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 380-741 |
| Cow position: | chr25:22941374-22941013 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 380-912 |
| Cow position: | chr25:24385245-24384713 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 381-602 |
| Cow position: | chr25:33530570-33530790 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 211, 11 |
| Conread position: | 381-993 |
| Cow position: | chr25:25652697-25653308 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 11 |
| Conread position: | 381-1003 |
| Cow position: | chr25:25652277-25652898 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 6 |
| Conread position: | 383-682 |
| Cow position: | chr25:3664273-3664572 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 219, 225 |
| Conread position: | 383-811 |
| Cow position: | chr25:4657459-4657030 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 387-888 |
| Cow position: | chr25:33157295-33156794 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 123, 114 |
| Conread position: | 387-968 |
| Cow position: | chr25:3664025-3664606 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 389-1003 |
| Cow position: | chr25:24385320-24384706 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 148 |
| Conread position: | 390-835 |
| Cow position: | chr25:33506683-33507122 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 391-636 |
| Cow position: | chr25:3636992-3636744 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 193, 202 |
| Conread position: | 391-695 |
| Cow position: | chr25:34473773-34474074 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 391-914 |
| Cow position: | chr25:25652874-25653400 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 358 |
| Conread position: | 391-936 |
| Cow position: | chr25:34473521-34474063 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 218 |
| Conread position: | 391-1003 |
| Cow position: | chr25:25652370-25652982 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 106 |
| Conread position: | 391-1003 |
| Cow position: | chr25:25652454-25653066 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 206 |
| Conread position: | 391-1003 |
| Cow position: | chr25:25652538-25653150 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 202 |
| Conread position: | 391-1007 |
| Cow position: | chr25:3663945-3664561 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 41 |
| Conread position: | 392-1003 |
| Cow position: | chr25:33530076-33530687 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 398-783 |
| Cow position: | chr25:33529119-33529504 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 34 |
| Conread position: | 398-1007 |
| Cow position: | chr25:25652209-25652818 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 267 |
| Conread position: | 401-862 |
| Cow position: | chr25:33530337-33530798 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 431-887 |
| Cow position: | chr25:23267442-23266993 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 151, 163 |
| Conread position: | 431-936 |
| Cow position: | chr25:24398933-24398431 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 439-1003 |
| Cow position: | chr25:25652166-25652730 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 146 |
| Conread position: | 448-769 |
| Cow position: | chr25:34734023-34733701 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 149 |
| Conread position: | 452-806 |
| Cow position: | chr25:22940525-22940171 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 169, 132 |
| Conread position: | 452-888 |
| Cow position: | chr25:33157398-33156962 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 455-841 |
| Cow position: | chr25:36844626-36844249 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 162, 167 |
| Conread position: | 456-1007 |
| Cow position: | chr25:3663926-3664477 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 137 |
| Conread position: | 458-1008 |
| Cow position: | chr25:24398990-24398443 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 216, 181 |
| Conread position: | 464-846 |
| Cow position: | chr25:22941374-22940994 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 464-1005 |
| Cow position: | chr25:3636559-3636018 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 466-1003 |
| Cow position: | chr25:34473512-34474046 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 118 |
| Conread position: | 467-931 |
| Cow position: | chr25:22235834-22236299 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 474-895 |
| Cow position: | chr25:4657452-4657031 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 474-927 |
| Cow position: | chr25:33529027-33529480 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 120 |
| Conread position: | 521-1005 |
| Cow position: | chr25:34762889-34763370 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 524-1007 |
| Cow position: | chr25:25652167-25652650 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 225 |
| Conread position: | 532-863 |
| Cow position: | chr25:34734023-34733691 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 11, 54 |
| Conread position: | 533-1003 |
| Cow position: | chr25:34763150-34763617 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 536-882 |
| Cow position: | chr25:22940525-22940179 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 158, 151 |
| Conread position: | 540-936 |
| Cow position: | chr25:3675987-3676383 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 129 |
| Conread position: | 548-899 |
| Cow position: | chr25:22941374-22941023 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 62, 57 |
| Conread position: | 550-972 |
| Cow position: | chr25:4657460-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 200 |
| Conread position: | 550-1006 |
| Cow position: | chr25:34473512-34473965 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 559-1008 |
| Cow position: | chr25:33529028-33529477 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 560-1007 |
| Cow position: | chr25:33530076-33530523 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 587-1003 |
| Cow position: | chr25:3675952-3676366 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 602-1007 |
| Cow position: | chr25:33506718-33507126 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 162 |
| Conread position: | 615-1007 |
| Cow position: | chr25:4657479-4657087 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 619-982 |
| Cow position: | chr25:22940526-22940163 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 54 |
| Conread position: | 619-1006 |
| Cow position: | chr25:22235903-22236290 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 620-1002 |
| Cow position: | chr25:23267421-23267046 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 131, 122 |
| Conread position: | 626-945 |
| Cow position: | chr25:34734012-34733693 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 117, 138 |
| Conread position: | 631-1006 |
| Cow position: | chr25:34473509-34473881 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 112, 129 |
| Conread position: | 644-959 |
| Cow position: | chr25:3637078-3636756 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 686-976 |
| Cow position: | chr25:22941321-22941030 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 692-967 |
| Cow position: | chr25:23267272-23266997 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 128, 51 |
| Conread position: | 692-1007 |
| Cow position: | chr25:3636499-3636184 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 697-1007 |
| Cow position: | chr25:33530046-33530355 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 728-1004 |
| Cow position: | chr25:3637078-3636799 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 766-1006 |
| Cow position: | chr25:33506717-33506957 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 792-1007 |
| Cow position: | chr25:3675987-3676202 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 53, 45 |
Show alignments to all cow chromosomes.